Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq13052 131 7e-28 seq6873 118 4e-24 seq5438 118 4e-24 seq10053 109 2e-21 seq3382 109 2e-21 seq10214 105 3e-20 seq48502 102 3e-19 seq35270 96.9 1e-17 seq23984 89.7 2e-15 seq17214 89.7 2e-15 seq3292 89.7 2e-15 seq57702 87.8 7e-15 seq70417 80.6 1e-12 seq63175 78.8 4e-12 seq1123 78.8 4e-12 seq35624 77.0 1e-11 seq10985 77.0 1e-11 >seq13052 Length=681615 Score = 131 bits (144), Expect = 7e-28 Identities = 101/120 (84%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||| |||||||| ||||| | ||||||| | |||| ||||||||||||||||||| Sbjct 284001 TGTTAGGAGCCGAAAGACGGTGATCCATGCCTGGACAGGGCGAAGCCAGAGGAAACTCTG 283942 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 283941 GTGGAGGTCCCTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 283882 >seq6873 Length=2177 Score = 118 bits (130), Expect = 4e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||||||||||||||||||||| ||| ||||| |||||||||||||| Sbjct 492 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGATGAAGGCAGAGGAAACTCTG 551 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | ||| | || ||||||||||| | ||| | ||||||||||||||| Sbjct 552 GTGGAGGACCATAGCAATCCTAACGTGCAAATCGGTTGTCTGACCTGGGTATAGGGGCGA 611 >seq5438 Length=1959 Score = 118 bits (130), Expect = 4e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||||||||||||||||||||| ||| ||||| |||||||||||||| Sbjct 389 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGCGCAGGATGAAGGCAGAGGAAACTCTG 448 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||| | ||| | ||| ||||||||||| | ||| | ||||||||||||||| Sbjct 449 GTAGAGGACCATAGCAATCCTGACGTGCAAATCGGTTGTCTGACCTGGGTATAGGGGCGA 508 >seq10053 Length=664014 Score = 109 bits (120), Expect = 2e-21 Identities = 92/113 (81%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634 ||||||||||||||| |||||| |||| |||||||||||||||||||||||||| || Sbjct 128422 GAAAGATGGTGAACTGTGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCG 128363 Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTC----AAATTTGGGTATAGGGGCGA 683 |||||| ||| ||||||||||| || || | ||||| ||||||||| Sbjct 128362 TAGCGGTCCTGACGTGCAAATCGGTCATCCGGTCGACCTGGGTGTAGGGGCGA 128310 >seq3382 Length=5189373 Score = 109 bits (120), Expect = 2e-21 Identities = 105/135 (78%), Gaps = 6/135 (4%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| |||| ||||| |||||||||||||||||| ||| |||| ||||||| || Sbjct 4749767 GAGCATACATGTTAGGACCGGAAAGATGGTGAACTATGTCTGGGCAGGGCGAAGCCACAG 4749826 Query 615 GAAACTCTGGTGGAGGCTC------GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||| | | |||||| ||| |||||||||| ||||| | Sbjct 4749827 GAAACTCTGGTGGAGGTCCGTAGCGGTAGCGGTCCTGATGTGCAAATCGGTCGTCTGACC 4749886 Query 669 TGGGTATAGGGGCGA 683 |||||||||| || Sbjct 4749887 CAGGTATAGGGGTGA 4749901 >seq10214 Length=847930 Score = 105 bits (116), Expect = 3e-20 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 398722 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 398663 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||| |||| ||||||| | | |||| | ||||| ||||| || Sbjct 398662 ACCGGCACGAGACCAATAGTCAACAAGTACCATAAGGAAAAGTTAAAAAGAACTTT--AA 398605 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||| ||| |||| | ||| || || Sbjct 398604 AGAGAGTTCAAGAGAGCGTAAAACTGTTAAGAGGTAAACG 398565 >seq48502 Length=3436129 Score = 102 bits (112), Expect = 3e-19 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| |||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 939447 GAGTCGGGTTGCTTGAAAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 939506 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| | ||||| ||||| || Sbjct 939507 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAAGGAAAGTTAAAAAGAACTTT--AA 939564 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || || ||| ||| | ||| || || Sbjct 939565 AGAGAGTTCAAGAGGGTGTAAAACCGTTAAGAGGTAAACG 939604 >seq35270 Length=166989 Score = 96.9 bits (106), Expect = 1e-17 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||| ||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 31245 GAGTTGGGTTGCTTGAGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 31304 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | |||| | ||||| ||||| || Sbjct 31305 ACCGGCACGAGACCGATAGTCAACAAGTACTGTAAAGAAAAGTTAAAAAGAACTTT--AA 31362 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || || ||| ||| | ||| || Sbjct 31363 AGAGAGTTCAAGAGGGTGTAAAACCGTTAAGAGGTAA 31399 >seq23984 Length=16077 Score = 89.7 bits (98), Expect = 2e-15 Identities = 117/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||| ||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 426 GAGTTGGGTTGCTTGAGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 485 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| | |||| ||||| || Sbjct 486 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAATGAAAG-TTAAAAAAACTTT--AA 542 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || || ||| ||| | ||| || || Sbjct 543 AGAGAGTTCAAGAGGGTGTAAAACCGTTAAGAGGTAAACG 582 >seq17214 Length=55720 Score = 89.7 bits (98), Expect = 2e-15 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| ||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 2212 GAGTCGGGTTGCTTGAGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 2153 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||| ||| || | ||||| | |||| ||||| || Sbjct 2152 ACCGGCACGAGACCGATAGTCAACACGTACAGAAAAGGAAAGTTAAAAAAAACTTT--AA 2095 Query 160 AGAGAGTT 167 |||||||| Sbjct 2094 AGAGAGTT 2087 >seq3292 Length=7324000 Score = 89.7 bits (98), Expect = 2e-15 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || ||| ||||||||||||||||||||| | | | ||||||||||||| ||| Sbjct 2510887 TGTTAGGGCCCAAAAGATGGTGAACTATGCCTGGACGGAGCGAAGCCAGAGGAAGCTCCA 2510946 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA-GGGGCG 682 | || || | || ||| ||| | ||||||| | ||||| | |||||||| |||||| Sbjct 2510947 GCGGCGGTCCATAGTGGTCCTGACATGCAAATTGGTCGTCCGACCTGGGTATATGGGGCG 2511006 Query 683 A 683 | Sbjct 2511007 A 2511007 >seq57702 Length=507167 Score = 87.8 bits (96), Expect = 7e-15 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||| | Sbjct 250074 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAACT 250015 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||| |||| ||||||| || | |||| | |||| ||||| || Sbjct 250014 ACCGGCACAAGACCAATAGTCAACAAGTACTGTAAAAAAAAGTTAAAAAAAACTTT--AA 249957 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||| ||| ||| | ||| || Sbjct 249956 AGAGAGTTCAAGAGGGCGTAAAACCGTTAAGAGGTAA 249920 >seq70417 Length=373 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||||||||| |||||||||||| | || | || |||||||||||||||||||||| Sbjct 350 TGGGACCCGAAATATGGTGAACTATCCTTGGGCAAGGAGAAGCCAGAGGAAACTCTGGTG 291 Query 627 GAGG 630 |||| Sbjct 290 GAGG 287 >seq63175 Length=1720526 Score = 78.8 bits (86), Expect = 4e-12 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || ||||| ||||||| ||||||| |||||| ||| |||||||||||||||||| | Sbjct 1294529 TTAGGACCTGAAAGATAGTGAACTCTGCCTGGGCAGGAAGAAGCCAGAGGAAACTCTACT 1294588 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||| || || | ||| |||| | |||| || || | ||| || |||||| Sbjct 1294589 GGAGGTCCGTAGTCATCCTGACGTGTAGATCGGTCATCTGACCTGGCTACAGGGGC 1294644 >seq1123 Length=454124 Score = 78.8 bits (86), Expect = 4e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||| | |||| |||||||||||||||| ||| |||||||||||||||||||| ||||| Sbjct 22134 GACTCAAAAGTTGGTGAACTATGCCTGGGCAGGATGAAGCCAGAGGAAACTCTGATGGAG 22075 Query 630 GCTCGCAGCGGTTCTG 645 | || ||| || ||| Sbjct 22074 GTTCATAGCAGTCCTG 22059 >seq35624 Length=1143573 Score = 77.0 bits (84), Expect = 1e-11 Identities = 77/99 (78%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| | ||| ||||||||||||||| |||||| |||| |||||||||||||| |||| Sbjct 790252 GTTAGTACCGGAAAGATGGTGAACTGTGCCTGGGCAGGGCGAAGCCAGAGGAAA--CTGG 790309 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 || ||| | ||||| ||| |||||| || ||||| Sbjct 790310 TGAAGGTCCATTGCGGTCCTGACGTGCAGGTCAGTCGTC 790348 >seq10985 Length=29816 Score = 77.0 bits (84), Expect = 1e-11 Identities = 111/157 (71%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || ||| |||||| | |||| ||||||| Sbjct 29594 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCTATCTAGGGCTAAAT 29653 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||| |||| ||||||| || | ||||| ||||||| |||||| | Sbjct 29654 ACAAGCACAAGACTGATACTCAACAAGTACTGTAAGGGAAAGTTGAAAAGAACTTTGAAG 29713 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 | ||||| || || | ||||| ||| | ||| || Sbjct 29714 AATGAGTTCAAGAGGGCCTGAAACCGTTAAGAGGTAA 29750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078341486000