Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq70590 199 6e-49 seq69891 143 4e-32 seq77169 140 5e-31 seq59202 123 4e-26 seq47268 122 1e-25 seq31139 120 5e-25 seq13422 111 3e-22 seq31756 105 1e-20 seq74433 91.5 2e-16 seq45446 87.8 3e-15 seq31357 80.6 4e-13 seq50413 78.8 1e-12 seq62145 73.4 6e-11 >seq70590 Length=429005 Score = 199 bits (220), Expect = 6e-49 Identities = 208/266 (78%), Gaps = 14/266 (5%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 || ||||| | ||||||||||| ||||||| |||| | ||||||||||||||| ||| Sbjct 278685 ACACGGTGAGCCAGTCAGTGTAGCACGCGTGCAGCCCCGGACATCTAAGGGCATCTTAGA 278744 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||| |||| || | |||||| | |||| | |||||||||||||| || Sbjct 278745 CCTGTTATTGC-TCAATCT-CAGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTAGGG 278802 Query 122 A---CCAACCATAGTCGA-TGGGGC-----TATTTAGCAGGTTAAGGTCTCGTTCGTTAT 172 || |||| ||| || || || |||||| | | |||||| | ||||| Sbjct 278803 GATGCCGACCAC--TCGGGTGTTGCATAACTAGTTAGCATGCCAGAGTCTCGATTGTTAT 278860 Query 173 CGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAG 232 ||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||||| | Sbjct 278861 CGGAATTAATCAGAAAAATCGCTCCACCAACTAAGAATGGCCATGCACCACCACCCA-GG 278919 Query 233 AATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||||||||||||||||||| Sbjct 278920 AATTGAGAAAGAGCTATCAATCTGTC 278945 >seq69891 Length=1360345 Score = 143 bits (158), Expect = 4e-32 Identities = 145/185 (78%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 52 GCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111 |||||||||||||||||| || |||| || | || ||| | |||| | |||||||||| Sbjct 1052358 GCATCACAGACCTGTTATCGC-TCAATCT-CAGGTGACTGAACGCCACTTGTCCCTCTAA 1052301 Query 112 GAAGCCAGC---CACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGT 165 |||| | | || ||| | | | | | | ||| |||||| | | ||||||| Sbjct 1052300 GAAGTTGGGGGACGCCGACCGTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGT 1052241 Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1052240 TCCTTATCGGAATTAACCAGACAAATCCCTCCACCAACTAAGAACGGCCATGCACCACCA 1052181 Query 226 CCCAT 230 || || Sbjct 1052180 CCAAT 1052176 >seq77169 Length=3228702 Score = 140 bits (154), Expect = 5e-31 Identities = 91/100 (91%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| |||||||||||| |||||||||||||||||| |||| |||||||||||||||| Sbjct 718924 GTCTCCTTCGTTATCGGAGTTAACCAGACAAATCACTTTACCAGCTAAGAACGGCCATGC 718983 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| ||||||| |||||| |||||| Sbjct 718984 ACCACCACCCACAGAATCGAGAAAGAACTATCAGTCTGTC 719023 >seq59202 Length=1088861 Score = 123 bits (136), Expect = 4e-26 Identities = 99/118 (84%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | | ||||| || |||||| ||||||||||||||| || ||||||| Sbjct 819405 GCTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCAGACAATTC-CTCCACC 819463 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||| | |||| |||||||| |||||||||||| Sbjct 819464 TTCTAAGAACGGCCATGCACCACCACCTACGGAATTGAGAAAGAGTTATCAATCTGTC 819521 >seq47268 Length=609280 Score = 122 bits (134), Expect = 1e-25 Identities = 182/251 (73%), Gaps = 17/251 (7%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA--CCTGTTATTGCCT 74 ||||| || || ||| |||| ||||| |||||||||||||| ||||||| ||| Sbjct 460830 CAGTGCAGTGCTTATGCAGCCCCAGACATCCAAGGGCATCACAGATGCCTGTTAGC-CCT 460772 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAAC--CA 129 || || | ||||| | |||| |||| |||||||||| | ||||||| | Sbjct 460771 CAGTCTCAGAG-GGCTGAATGCCACGTGTCCTTCTAAGAAGCTGGGGGACACCAACTGCT 460713 Query 130 TAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | || |||| |||||| | | |||| ||||||||| |||||||||| || Sbjct 460712 CAGGGGGTGCCTAGCTAGTTAGCATGCCAGAGTCTTTTTCGTTATCAGAATTAACCAAAC 460653 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||| |||||||| |||| |||||||||||||| |||| |||| ||||||||| Sbjct 460652 AAATTGCTCCACCAG----GAACAGCCATGCACCACCATCCATGGAATGGAGAAAGAGC- 460598 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 460597 -TCAATCTGTC 460588 >seq31139 Length=1645295 Score = 120 bits (132), Expect = 5e-25 Identities = 84/95 (88%), Gaps = 8/95 (8%) Strand=Plus/Minus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| Sbjct 1556387 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACC----AAGAATGTCCATGCACCA- 1556333 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||||||||||||||||||||||| Sbjct 1556332 ---CCATGGAATCAAGAAAGAGCTATCAATCTGTC 1556301 >seq13422 Length=2171933 Score = 111 bits (122), Expect = 3e-22 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 |||||||||||||||||| |||||| ||||||||| ||||| | ||||||||||| ||| Sbjct 235953 GGAATTAACCAGACAAATTGCTCCACTAACTAAGAATGGCCAAGTACCACCACCCACAGA 235894 Query 234 ATCAAGAAAGAGCTATCAATCTGT 257 | |||||||||||| ||||||||| Sbjct 235893 ACCAAGAAAGAGCTGTCAATCTGT 235870 >seq31756 Length=287592 Score = 105 bits (116), Expect = 1e-20 Identities = 178/253 (70%), Gaps = 30/253 (12%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | | || |||| || |||| |||||||||||||| ||||| ||| || Sbjct 78131 GTCAGTGTAGCACATGCGCAGCCCCGAGCATCGAAGGGCATCACAGAACTGTTGTTG-CT 78073 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------CCAGCCACCA 125 ||| ||| |||||| | |||| | |||||||||||||| | | || | Sbjct 78072 CAACCTT-GGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCTGACAGC- 78015 Query 126 ACCATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 | ||| | || | ||| |||||| | | ||||| || |||||| ||||||||| Sbjct 78014 TCGGGAGTTGCAT--GACTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCT 77957 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 || | |||||| | | |||||||||||||||||| |||||| || || Sbjct 77956 GATATATCACTTC-----------ATGGCCATGCACCACCACCCGCAGAATCGAG---GA 77911 Query 245 G-CTATCAATCTG 256 | ||||||||||| Sbjct 77910 GTCTATCAATCTG 77898 >seq74433 Length=1485305 Score = 91.5 bits (100), Expect = 2e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| || | || |||||||| || ||||| | |||||||| | |||| ||||||| Sbjct 522675 GTCTCATTTGACATAGGAATTAAGCAAACAAACCTTTCCACCAATTCAGAATGGCCATGT 522616 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| ||| |||||||||||| | ||||| |||||| Sbjct 522615 ACCACCAGCCACAGAATCAAGAAAAAAATATCAGTCTGTC 522576 >seq45446 Length=1454406 Score = 87.8 bits (96), Expect = 3e-15 Identities = 79/97 (81%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| ||| |||| |||| | ||||||||||||| ||||||||||||||| || Sbjct 805062 GTCAGTGTAGTGCGTGTGCAGCCCCGGACATCTAAGGGCACTACAGACCTGTTATTG-CT 805004 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111 ||| | || |||||| | |||| | ||| |||||| Sbjct 805003 CAATC-TCGGGTGGCTGAACGCCACTTGTCACTCTAA 804968 >seq31357 Length=1604567 Score = 80.6 bits (88), Expect = 4e-13 Identities = 73/93 (78%), Gaps = 8/93 (9%) Strand=Plus/Plus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 || |||| ||||||||| ||| ||||| ||||| || ||||||||||||||| Sbjct 1165790 TCCTTATTGGAATTAACTAGAAAAATCGCTCCATGAA--------GGCCATGCACCACCA 1165841 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| ||||||||||||||||| ||| Sbjct 1165842 TCCACGGAATCCAGAAAGAGCTATCAATCAGTC 1165874 >seq50413 Length=570718 Score = 78.8 bits (86), Expect = 1e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||| ||||||||||||||||||| |||||||||||||||||| || | || ||| || Sbjct 298007 AAAGCACTCCACCAACTAAGAACACCCATGCACCACCACCCATTGACTGAAAAAACCACT 297948 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 297947 GTCAATCTGTC 297937 >seq62145 Length=2029744 Score = 73.4 bits (80), Expect = 6e-11 Identities = 59/69 (86%), Gaps = 2/69 (3%) Strand=Plus/Minus Query 47 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCC 106 ||||||||||||||||||||||||| ||||| | || |||||| | |||| | ||||| Sbjct 1523884 TAAGGGCATCACAGACCTGTTATTG-CTCAATC-TCGGGTGGCTGAACGCCACTTGTCCC 1523827 Query 107 TCTAAGAAG 115 ||||||||| Sbjct 1523826 TCTAAGAAG 1523818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796203166920