Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq18094 286 6e-75 seq40920 255 1e-65 seq58749 206 5e-51 seq55204 196 8e-48 seq73900 179 6e-43 seq42264 178 2e-42 seq10140 178 2e-42 seq63916 152 9e-35 seq3292 138 2e-30 seq62883 132 8e-29 seq69836 129 1e-27 seq39204 120 5e-25 seq76631 113 8e-23 seq51976 93.3 7e-17 seq2351 80.6 5e-13 >seq18094 Length=1937 Score = 286 bits (316), Expect = 6e-75 Identities = 201/228 (88%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 1637 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 1696 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| | Sbjct 1697 ATGACGGTCTAAACCCAGCTCATGTTCCCTAATAGTGGATGAACAATCCAACGCTTGGTG 1756 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||| ||||||||||||||||||| || | |||| Sbjct 1757 AATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGTGACATTGCTA 1816 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1817 TGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 1864 >seq40920 Length=1186382 Score = 255 bits (282), Expect = 1e-65 Identities = 213/261 (82%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||||||||||||||| |||||||| || ||||| |||||||||||||||| || Sbjct 1146074 CATCAGTAGGGTAAAACTAATCTGTCTCACCACAGTCTAGTCCCAGCTCACGTTCCCAAT 1146015 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||| ||||||||| |||||||||||| ||||||| |||||||||| Sbjct 1146014 TAGTGGGTGAACACCCCAACGCTTGGGGAATTCTGCTTCAAAATGATAGAAAGAGCCGAC 1145955 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||| |||||||||||||||| ||| |||| ||| |||| |||||||||| ||||||| Sbjct 1145954 ATCAAAGGATCAAAAAGCAATGTCACTATAAACATTTGGTCACCACAAGCCAATTATCCC 1145895 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||||||||||||||| ||| || || | ||| | | || | |||||||| ||| Sbjct 1145894 TGTGGTAACTTTTCTGACACTTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCGTGAGGA 1145835 Query 272 CACACTTTCATGGTTTGTATT 292 | |||||| ||| |||||| Sbjct 1145834 TCCGCTTTCACGGTCTGTATT 1145814 >seq58749 Length=2680103 Score = 206 bits (228), Expect = 5e-51 Identities = 178/220 (81%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135 ||||||| ||||||||||||||||||||||| |||| ||| |||||| ||||| || Sbjct 1468462 AGCTCACATTCCCTATTAGTGGGTGAACAATTCAACACTTGGTGAATTCGGCTTCACAAT 1468403 Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA---CGTCGCTATGAACGCTTGGCT 192 |||||||||||| ||||| |||||||||||| |||| ||||||| ||||| ||||||| Sbjct 1468402 GATAGGAAGAGCTGACATTGAAGGATCAAAACGCAACGTCGTCGCTGTGAACACTTGGCT 1468343 Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 ||||||||||||||||||||||||||||||||||| ||| || || | ||| | | | Sbjct 1468342 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACTTCCTGCTTAAAACCCCAAAG 1468283 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | |||||| | ||||| | |||||| || || ||| Sbjct 1468282 ATCAGAAGGATTGTGAGGCCCCCCTTTCACAGTCTGCATT 1468243 >seq55204 Length=3538205 Score = 196 bits (216), Expect = 8e-48 Identities = 206/266 (77%), Gaps = 9/266 (3%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||| ||||||||| ||||||||||||||| ||||| || ||||||||| || ||| Sbjct 1191765 TCAACAGTAGGGTGAAACTAACCTGTCTCTCCACGGTGAAATTCCAGCTCACATTGTCTA 1191824 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||| || || ||| | |||||| |||||| |||||||| | Sbjct 1191825 TTAG--GGTGAACAATCTGACCGTT---GAACTGTGCTTCACGATGATAAGAAGAGCCAA 1191879 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||| || |||| | |||||||||| ||||||||||||||| ||||||| | Sbjct 1191880 CATCGAAGGATGGAAGAGCAGCATCGCTATGAATACTTGGCTGCCACAAGTCAGTTATAC 1191939 Query 211 CTGTGGTAACTTTTCTGGCACCT-CTAGCCTCAAATTTCGAG-GGACTAAAGGATCGATA 268 || |||||||| ||||| || || ||| || ||| | | || || | |||||| | Sbjct 1191940 CTCTGGTAACTCTTCTGACATCTCCTA--CTTAAAATGCAAGAGGTCAGCAGGATCACGA 1191997 Query 269 GGCCACACTTTCATGGTTTGTATTCA 294 ||| ||||||||||| |||||||| Sbjct 1191998 GGCTCCACTTTCATGGCCTGTATTCA 1192023 >seq73900 Length=2318952 Score = 179 bits (198), Expect = 6e-43 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||| |||||| | |||| |||||| | |||||| |||| |||||||||| | Sbjct 877476 TCATTAGTAGAGTAAAATTTACCTATCTCATAGCAGTCTAAGCCCAACTCACGTTCCATG 877535 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | |||| |||||||||||||| ||| |||| |||| || ||||||| ||||| || Sbjct 877536 TAAGTGAGTGAACAATCCAACACTTGATGAATCCTGCCTCTCAGTGATAGGGAGAGCTGA 877595 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || |||| |||||||||| |||| || |||| |||| || | |||||||||||||| Sbjct 877596 CAAAGAAGAATCAAAAAGCGACGTTACTGTGAATGCTTAGCCACTGCAAGCCAGTTATCC 877655 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 ||||| ||||||||||| ||| || Sbjct 877656 CTGTGTTAACTTTTCTGACACTTC 877679 >seq42264 Length=2517936 Score = 178 bits (196), Expect = 2e-42 Identities = 140/168 (83%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| |||||| ||||||||||||||||| || ||||| |||||||||| ||||| || Sbjct 271675 TCATCGGTAGGGGAAAACTAACCTGTCTCACGATGGTCTCAACCCAGCTCGCGTTCTCTG 271734 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||| |||||| ||| |||| ||| |||||| | |||||||| |||||||| Sbjct 271735 TTAGTGGGCGAACAACCCAGTGCTTGGTGAACTCTGCTCCACAATGATAGGGAGAGCCGA 271794 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 |||| ||||| |||| |||||| ||||| ||||| |||||| |||||| Sbjct 271795 CATCAAAGGAGCAAAGAGCAACATCGCTGTGAACACTTGGCCGCCACA 271842 >seq10140 Length=1796236 Score = 178 bits (196), Expect = 2e-42 Identities = 145/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||||| |||||||||||| |||||||||||||| || ||||| Sbjct 623516 GAATTCTGCTTCACAATGATAGAAAGAGCCGACATTGAAGGATCAAAAAGTGACTTCGCT 623575 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 |||||| |||||| ||||| |||||||||||||||||||||||||||| |||||| || Sbjct 623576 ATGAACACTTGGCCACCACAGGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGC 623635 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | || | ||||||| ||||| | |||||||||| |||||||| Sbjct 623636 TTAAAACCCCAAAGGTCAGAAGGATCAGGAGGCCCCGCTTTCATGGTCTGTATTCA 623691 >seq63916 Length=1694157 Score = 152 bits (168), Expect = 9e-35 Identities = 116/136 (85%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||| Sbjct 1675676 TCATCAGTAGGGTAAAACTAACCTGTCTCAGGGTGGTCTAAGCCCAGCCCACGTTCCCTG 1675735 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| | |||| ||||||||| ||| |||||||||||| |||||| |||||||||| Sbjct 1675736 TTAGGGTGTGAGCAATCCAACACTTGGTGAATTCTGCTTCACAATGATA-GAAGAGCCGA 1675794 Query 151 CATCGAAGGATCAAAA 166 || ||||| |||||| Sbjct 1675795 CACTGAAGGGTCAAAA 1675810 >seq3292 Length=7324000 Score = 138 bits (152), Expect = 2e-30 Identities = 100/116 (86%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| || |||||||| || |||||| ||||||||||||||||| | ||| Sbjct 800690 GAATTCTGCTTCACAATTATAGGAAGGGCTGACATCCAAGGATCAAAAAGCAACATAGCT 800749 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||| |||||| |||||| |||| |||||||||||||| ||||||| |||||| Sbjct 800750 ATGAACACTTGGCCACCACAATCCAGATATCCCTGTGGTAAATTTTCTGACACCTC 800805 >seq62883 Length=78040 Score = 132 bits (146), Expect = 8e-29 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||| || ||| |||||||||||||| ||||| ||||||||||||||||| ||| || Sbjct 56175 GAATTTTGTTTCACAATGATAGGAAGAGCTGACATTGAAGGATCAAAAAGCAATGTCACT 56234 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||||| |||||||||||||||||| ||||||||| ||||| |||| | |||||| Sbjct 56235 GTGAACACTTGGCTGCCACAAGCCAATTATCCCTGCGGTAAATTTTTGGACACCTC 56290 >seq69836 Length=190059 Score = 129 bits (142), Expect = 1e-27 Identities = 106/129 (82%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 |||||||| |||||||| ||||||||||||| || | |||||||| ||||| ||||||| Sbjct 151963 TAGGAAGAACCGACATCAAAGGATCAAAAAGTGACATTGCTATGAATGCTTGCCTGCCAC 151904 Query 198 AAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA 257 ||||||||||| |||||||||||||||||| ||||| || | ||| || | || | Sbjct 151903 AAGCCAGTTATTCCTGTGGTAACTTTTCTGATACCTCCTGCTTAAAACCTCAAAGGTCAG 151844 Query 258 AAGGATCGA 266 |||||| || Sbjct 151843 AAGGATAGA 151835 >seq39204 Length=1831341 Score = 120 bits (132), Expect = 5e-25 Identities = 115/145 (79%), Gaps = 8/145 (6%) Strand=Plus/Plus Query 2 ACTAAGCGGAATTACCATTGGGGCGACGG----TCATCAGTAGGGTAAAACTAACCTGTC 57 ||||||||| ||||| || ||| || | ||||| ||||||||||||||||||||| Sbjct 1005187 ACTAAGCGGGATTACTAT---GGCAACAGCACATCATCGGTAGGGTAAAACTAACCTGTC 1005243 Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| ||||||| |||||||||||||||||| |||||||||||||| | || |||| Sbjct 1005244 TCACAGCGGTCTAGACCCAGCTCACGTTCCCTGTTAGTGGGTGAACAGACAAATGCTTGG 1005303 Query 118 CGAATTCTGCTTCGGTATGATAGGA 142 || |||| || ||| ||| |||| Sbjct 1005304 TGAGTTCTTCTCTGGT-TGAGAGGA 1005327 >seq76631 Length=1025911 Score = 113 bits (124), Expect = 8e-23 Identities = 123/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||||||||||| ||||| |||| ||||||| | | || |||||| ||||||| Sbjct 106932 ATGATAGGAAGAGTTGACATTGAAGAATCAAAACGTGATCTCCTTATGAATGCTTGGCCA 106991 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC-GAGG 252 |||||| |||||| ||||||| |||| ||||||| ||||| | |||||| | | || | Sbjct 106992 CCACAAACCAGTTGTCCCTGTAGTAAGTTTTCTGAGACCTCCTG-CTCAAAATCCTGAAG 107050 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | ||| ||| ||||| |||||||||| ||||||| Sbjct 107051 GTCAGAAGAATCATGAGGCCCTGCTTTCATGGTCTGTATTC 107091 >seq51976 Length=564124 Score = 93.3 bits (102), Expect = 7e-17 Identities = 77/93 (83%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 || ||| |||| ||||||| ||||||||| ||| ||||||| |||||||||||| || Sbjct 188843 AACAGCTAACATTGAAGGATTAAAAAGCAATGTCACTATGAAAACTTGGCTGCCACCAGT 188902 Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 || ||| ||||||||||| |||||| |||||| Sbjct 188903 CAATTACCCCTGTGGTAA--TTTCTGACACCTC 188933 >seq2351 Length=893335 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||| |||| ||||||||||||| |||||||||||| |||||||||||||| | Sbjct 171938 ATTAGTATGTGAGCAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTG 171879 Query 150 ACATCGAAGGATCAAAA 166 |||| |||||| || || Sbjct 171878 ACATTGAAGGACCAGAA 171862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853739377920