Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq70590 132 9e-29
seq45446 127 4e-27
seq69891 111 3e-22
seq48073 104 4e-20
seq31756 84.2 4e-14
>seq70590
Length=429005
Score = 132 bits (146), Expect = 9e-29
Identities = 166/224 (74%), Gaps = 3/224 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||| |
Sbjct 278796 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTAAG 278739
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||| ||||||||||| | || || || | |
Sbjct 278738 ATGCCCTTAGATGTCCGGGGCTGCACGCGTGCTACACTGACTGGCTCACCGTGTGCCTAC 278679
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| |||| ||||| | | || | | ||||| ||||||| | ||||
Sbjct 278678 CCTGCGCCGGCAGGTGCAGGTAACCCGTTGAACCCCATTCGTGATGGGGATCAGGGATTG 278619
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294
|||||||| | | | |||||||||| || |||||| | | ||||
Sbjct 278618 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGGGTCA 278575
>seq45446
Length=1454406
Score = 127 bits (140), Expect = 4e-27
Identities = 165/224 (74%), Gaps = 7/224 (3%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| ||||||||||||||| ||||||||||||| | |||| |||| ||| ||||
Sbjct 804998 AGATTGAG-CAATAACAGGTCTGTAGTGCCCTTAGATGTCCGGGGCTGCACACGCACTAC 805056
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTG-GCCGGAAGGTCTGGGTAATCTTGTTAAAC 224
|||||| | || | || | | |||| | || || ||| ||||||| | | || |
Sbjct 805057 ACTGACTGGCTCAGCATGTGCCT-ACCTGGTGCTGGCAGGCGTGGGTAACCCATTGAACC 805115
Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284
| | ||| ||| ||| |||||||| ||||| | | | |||||||||| || |||||
Sbjct 805116 CCATTAGTGATGGCGATCAGGCATTGCAGTTATTCCCCATGAACGAGGAATTCCCAGTAA 805175
Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| || ||||| ||| ||| ||| ||||||||| ||||||
Sbjct 805176 GTACGGGTCATAAGCTTGCG----TTAAGTCCCTGCCTTTTGTA 805215
>seq69891
Length=1360345
Score = 111 bits (122), Expect = 3e-22
Identities = 181/259 (70%), Gaps = 24/259 (9%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||| | ||| ||| | || || ||||| | |||||||||||||
Sbjct 1052297 CTTCTTAGAGGGACAAGTGGCGTTCAGTCACCTG--AGATTGAG-CGATAACAGGTCTGT 1052353
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||| |||| |||||||||||||| | || || || | |
Sbjct 1052354 GATGCT-----------------GCACTCGCGCTACACTGACTGGCTCAGCGTGTGCCTA 1052396
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||| |||| ||| |||||| | | || | | | ||| |||| || | | |||
Sbjct 1052397 GCCTACTCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTGGTGATGGG-ATCGGGGATT 1052455
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
||||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||
Sbjct 1052456 GCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCG-GTCATAAGCTTGCGTTGAT 1052514
Query 310 TACGTCCCTGCCCTTTGTA 328
|| ||||||||||||||||
Sbjct 1052515 TAAGTCCCTGCCCTTTGTA 1052533
>seq48073
Length=1975728
Score = 104 bits (114), Expect = 4e-20
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173
||||||||||||||||||| ||||||||||| | |||| ||| || ||| ||||||| |
Sbjct 683855 GCAATAACAGGTCTGTGATACCCTTAGATGTCCAGGGCTGCAGGCATGCTCCACTGACTG 683914
Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233
||| | || | | || ||| | ||| ||| | || | || | | || |
Sbjct 683915 GCTCAATGTGTGCCTACCCCACGCCTGCAGGCACAGGTGACCTGTTGAACCCCATTCATA 683974
Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCT-TCAACGAGGAATGCCTAGTAAGCGCGTGT 292
||||||| | |||||| || || |||| || ||||||| || |||||| | |
Sbjct 683975 ATGGGGATCTGGGATTGCAGTT-TTTCTCTAGGAATGAGGAATTCCCAGTAAGTAAGGGC 684033
Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||| ||| | |||||||| ||||||||||||||||
Sbjct 684034 CATAAGCTTGTGTTGATTAAGTCCCTGCCCTTTGTA 684069
>seq31756
Length=287592
Score = 84.2 bits (92), Expect = 4e-14
Identities = 127/174 (73%), Gaps = 5/174 (3%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | ||| ||||| ||| ||||| ||||||
Sbjct 78033 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGGTTGAG-CAACAACAGTTCTGTG 78090
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||| |||| || |||| || | | ||||||||||| | || | || | |
Sbjct 78091 ATGCCCTTCGATGCTCGGGGCTGCGCATGTGCTACACTGACTGGCTCAGCATGTGCCTAC 78150
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT-GTCGTGCTGGGGATAG 243
||| ||| | ||| ||||||| || ||| ||| || | ||| |||||||||
Sbjct 78151 CCTATGCCAGCAGGCGTGGGTAA-CTAGTTGAACCCTCTTTGTGATGGGGATAG 78203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946467624960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |