Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq70590 132 9e-29 seq45446 127 4e-27 seq69891 111 3e-22 seq48073 104 4e-20 seq31756 84.2 4e-14 >seq70590 Length=429005 Score = 132 bits (146), Expect = 9e-29 Identities = 166/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| ||||||||||||| | Sbjct 278796 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTAAG 278739 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||| ||||||||||| | || || || | | Sbjct 278738 ATGCCCTTAGATGTCCGGGGCTGCACGCGTGCTACACTGACTGGCTCACCGTGTGCCTAC 278679 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| |||| ||||| | | || | | ||||| ||||||| | |||| Sbjct 278678 CCTGCGCCGGCAGGTGCAGGTAACCCGTTGAACCCCATTCGTGATGGGGATCAGGGATTG 278619 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 |||||||| | | | |||||||||| || |||||| | | |||| Sbjct 278618 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGTGGGTCA 278575 >seq45446 Length=1454406 Score = 127 bits (140), Expect = 4e-27 Identities = 165/224 (74%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||||| ||||||||||||| | |||| |||| ||| |||| Sbjct 804998 AGATTGAG-CAATAACAGGTCTGTAGTGCCCTTAGATGTCCGGGGCTGCACACGCACTAC 805056 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTG-GCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 |||||| | || | || | | |||| | || || ||| ||||||| | | || | Sbjct 805057 ACTGACTGGCTCAGCATGTGCCT-ACCTGGTGCTGGCAGGCGTGGGTAACCCATTGAACC 805115 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 | | ||| ||| ||| |||||||| ||||| | | | |||||||||| || ||||| Sbjct 805116 CCATTAGTGATGGCGATCAGGCATTGCAGTTATTCCCCATGAACGAGGAATTCCCAGTAA 805175 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | || ||||| ||| ||| ||| ||||||||| |||||| Sbjct 805176 GTACGGGTCATAAGCTTGCG----TTAAGTCCCTGCCTTTTGTA 805215 >seq69891 Length=1360345 Score = 111 bits (122), Expect = 3e-22 Identities = 181/259 (70%), Gaps = 24/259 (9%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| | ||| ||| | || || ||||| | ||||||||||||| Sbjct 1052297 CTTCTTAGAGGGACAAGTGGCGTTCAGTCACCTG--AGATTGAG-CGATAACAGGTCTGT 1052353 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||| |||| |||||||||||||| | || || || | | Sbjct 1052354 GATGCT-----------------GCACTCGCGCTACACTGACTGGCTCAGCGTGTGCCTA 1052396 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| |||| ||| |||||| | | || | | | ||| |||| || | | ||| Sbjct 1052397 GCCTACTCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTGGTGATGGG-ATCGGGGATT 1052455 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||| Sbjct 1052456 GCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCG-GTCATAAGCTTGCGTTGAT 1052514 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 1052515 TAAGTCCCTGCCCTTTGTA 1052533 >seq48073 Length=1975728 Score = 104 bits (114), Expect = 4e-20 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||| ||||||||||| | |||| ||| || ||| ||||||| | Sbjct 683855 GCAATAACAGGTCTGTGATACCCTTAGATGTCCAGGGCTGCAGGCATGCTCCACTGACTG 683914 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 ||| | || | | || ||| | ||| ||| | || | || | | || | Sbjct 683915 GCTCAATGTGTGCCTACCCCACGCCTGCAGGCACAGGTGACCTGTTGAACCCCATTCATA 683974 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCT-TCAACGAGGAATGCCTAGTAAGCGCGTGT 292 ||||||| | |||||| || || |||| || ||||||| || |||||| | | Sbjct 683975 ATGGGGATCTGGGATTGCAGTT-TTTCTCTAGGAATGAGGAATTCCCAGTAAGTAAGGGC 684033 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| | |||||||| |||||||||||||||| Sbjct 684034 CATAAGCTTGTGTTGATTAAGTCCCTGCCCTTTGTA 684069 >seq31756 Length=287592 Score = 84.2 bits (92), Expect = 4e-14 Identities = 127/174 (73%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| ||| ||||| |||||| Sbjct 78033 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGGTTGAG-CAACAACAGTTCTGTG 78090 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||| |||| || |||| || | | ||||||||||| | || | || | | Sbjct 78091 ATGCCCTTCGATGCTCGGGGCTGCGCATGTGCTACACTGACTGGCTCAGCATGTGCCTAC 78150 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT-GTCGTGCTGGGGATAG 243 ||| ||| | ||| ||||||| || ||| ||| || | ||| ||||||||| Sbjct 78151 CCTATGCCAGCAGGCGTGGGTAA-CTAGTTGAACCCTCTTTGTGATGGGGATAG 78203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946467624960