Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq25624 342 2e-91 seq54258 313 8e-83 seq36351 228 3e-57 seq62282 172 2e-40 seq40920 159 1e-36 seq73735 118 3e-24 seq8210 105 2e-20 seq17407 102 3e-19 seq17884 98.7 3e-18 seq74651 96.9 1e-17 seq68954 96.9 1e-17 seq58749 93.3 1e-16 seq70241 91.5 5e-16 seq530 91.5 5e-16 seq76631 86.0 2e-14 seq69372 86.0 2e-14 >seq25624 Length=1691541 Score = 342 bits (378), Expect = 2e-91 Identities = 256/298 (86%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | |||||||||||| |||| Sbjct 1154270 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCTTCCCACACTAGAGTCAAGTTCAA 1154211 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | | Sbjct 1154210 TAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGATGG 1154151 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||| ||||||||||||||| | |||||||| || | ||||||||| ||||| Sbjct 1154150 ATAGTAGGTAGAGACAGTGGGAATCTC--TCATCCATTCGTGTGAGTCACTAATCAGATG 1154093 Query 417 ACGAGGCA-TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 || ||||| |||||||| |||||||||||||| |||||||| ||| ||| | | |||| Sbjct 1154092 ACAAGGCATTTTGGCTATCTTAAGAGAGTCATGGTTACTCCTGCCACTTAGCGGTGCTTC 1154033 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | | |||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 1154032 ATGGTATTTCTTCACTTTGACATTCAGGGCACTGGGCAGAAATCACATCGCATCAACA 1153975 >seq54258 Length=302827 Score = 313 bits (346), Expect = 8e-83 Identities = 250/300 (83%), Gaps = 1/300 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| |||| |||||||| || || || | | |||||||||||||||||| Sbjct 100096 CTCCCACTTACTCTATACCTCTCATATCTCTTTACTGTGCCAGACTAGAGTCAAGCTCAA 100037 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || |||||||||||| | |||||| |||||||| ||||| |||||||||||||| || | Sbjct 100036 CAATGTCTTCTTTCCCAGATGATTCGGCCAAGCCTGTTCCTTTGGCTGTGGTTTC-CTGG 99978 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||| ||||||||| ||| |||||||||| || ||| |||||| ||| Sbjct 99977 ATAGTAGGTAGGGACAATGGGAATCTGGTTCATCCATTCATCTGCATCAGTAATTACATG 99918 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||| ||||||| |||||||||||||| ||||||||| || ||||| || ||| Sbjct 99917 ATGAGGCTTTTGGCTCTCTTAAGAGAGTCATCGTTACTCCCACCAGTTACCTGCCCTTCA 99858 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||||| ||| |||||||||| |||||| ||||||||||||| ||||||| || Sbjct 99857 TTGAATTTCTTTACTATGACATTCAGTGCACTGAGCAGAAATCACATCAGGTCAACACCA 99798 >seq36351 Length=2866441 Score = 228 bits (252), Expect = 3e-57 Identities = 174/206 (84%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||| ||||| ||| ||||| | | | ||||||||||||| |||| Sbjct 2483715 CTCCCACTTATTCTACATGTCTCAGGTCTCTTCACCATGCCAGACTAGAGTCAAGTTCAA 2483774 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||| |||||||| || | || ||||||||||||||||||| ||||| Sbjct 2483775 TAGGGTCTTCTTTCCCTGCTGATTCTGCTACACCTGTTCCCTTGGCTGTGGTTTTGCTAG 2483834 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||| ||||| |||| || ||||||||||| |||||||| || || Sbjct 2483835 ATAGTAGGTAGGGACAATGGGAGTCTCCTTCATCCATTCATGGATGTCACTAACTATATA 2483894 Query 417 ACGAGGCATTTGGCTACCTTAAGAGA 442 | ||||||| | |||||||||||||| Sbjct 2483895 ATGAGGCATCTAGCTACCTTAAGAGA 2483920 >seq62282 Length=2733176 Score = 172 bits (190), Expect = 2e-40 Identities = 125/144 (87%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || || || |||||||||||||||||||||| || |||||||||| |||| ||||| ||| Sbjct 1689810 GACAGGAGGTAGGGACAGTGGGAATCTCGTTCATTCATTCATGCGTGTCATTAATTGGAT 1689751 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 || |||| |||||||||||||||||||||||||||||||||| |||||||| | || Sbjct 1689750 GATGAGGTATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCACCGTTTAC---CACTCC 1689694 Query 476 GTTGAATTTCTTCACTTTGACATT 499 |||||||||||||||| |||||| Sbjct 1689693 ATTGAATTTCTTCACTTCGACATT 1689670 >seq40920 Length=1186382 Score = 159 bits (176), Expect = 1e-36 Identities = 123/146 (84%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||| ||||||||| || ||||| | | ||||||| || ||||| Sbjct 1145490 CTCCCACTTATTCTGCACCTCTCATTTCTCTTCACCATGCTAGACTAGAAGCAGTCTCAA 1145431 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||| |||| |||| |||||||| ||||||||| ||||| ||||||||||||| || | Sbjct 1145430 CAGGGTTTTCTCTCCCTGCTGATTCAGCCAAGCCCATTCCCGTGGCTGTGGTTTCACTGG 1145371 Query 357 ATAGTAGATAGGGACAGTGGGAATCT 382 ||||||| |||||||||||||||||| Sbjct 1145370 ATAGTAGGTAGGGACAGTGGGAATCT 1145345 >seq73735 Length=608513 Score = 118 bits (130), Expect = 3e-24 Identities = 88/102 (86%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||| ||| ||||||| | |||||||||||||||||| | |||||| || | | ||||| Sbjct 352154 TTTTGCTGGATAGTAAAAAGGGACAGTGGGAATCTCACTCATCCATACACACACATCACT 352095 Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 |||||||||| ||||||||| ||||||||||||||||||||| Sbjct 352094 AATTAGATGATGAGGCATTT-GCTACCTTAAGAGAGTCATAG 352054 >seq8210 Length=1738640 Score = 105 bits (116), Expect = 2e-20 Identities = 117/152 (77%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||| |||||| | | || |||||| | ||| || |||||||||||| || || |||| Sbjct 1450317 AGTGAGAATCTTGGTCATGAATTCATACATGTCTCTGATTAGATGACGAAGCGTT-GGCT 1450259 Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 ||||||||||| ||||||||||| ||| |||| ||| ||||||||||||||| Sbjct 1450258 ACCTTAAGAGATTCATAGTTACTGT-GCCATTTATTTAA-CTTCATTGAATTTCTTCACT 1450201 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||||| | | |||||||| ||| || || Sbjct 1450200 CTGACATTGAATGTACTGGGCAAAAACCATAT 1450169 >seq17407 Length=230093 Score = 102 bits (112), Expect = 3e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318 || ||| ||||| | ||||||| |||||||||||||||||||||||||||| ||||| Sbjct 198057 CATGTCTCTTCACCGTGCCGGACTACAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGA 198116 Query 319 TTCCGCCAAGCCCGTTCCCTTGGC 342 |||||||| |||||||||||||| Sbjct 198117 CTCCGCCAAACCCGTTCCCTTGGC 198140 >seq17884 Length=327165 Score = 98.7 bits (108), Expect = 3e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||||||||||| | |||||||||| |||| |||||||| ||||| |||| Sbjct 46849 CTTCTGCTCTACAGGAGGTCTCTGTTCTCCCTGAGCTTACCTTAGGATACCTGTGTTACC 46790 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| || |||||| ||||||||| ||||| || |||| Sbjct 46789 ATTTGACAGGTGTACCACCCCAGTCAAACTCCCAACCTGGCACTGTC 46743 >seq74651 Length=10944 Score = 96.9 bits (106), Expect = 1e-17 Identities = 117/158 (74%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 |||| | ||||||| ||| |||| || | || | ||||| || ||| ||||||||| Sbjct 1036 GTCAGGTTCAACAGAGTCCTCTTCATCCACAGACTTTGCCAAACCA-TTCTCTTGGCTGT 1094 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||||| ||| | ||| | || ||| ||||| | || ||||||||||| ||| Sbjct 1095 AGTTTCATCAGAAAATAGGTGAAGAGAGTAGGAATACCATTCTTCCATTCATGCATGTCT 1154 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 ||||||||||| |||| |||| || |||||||||||| Sbjct 1155 CTAATTAGATGCTGAGGAATTTAGCCACCTTAAGAGAG 1192 >seq68954 Length=2242761 Score = 96.9 bits (106), Expect = 1e-17 Identities = 117/158 (74%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 |||| | ||||||| ||| |||| || | || | ||||| || ||| ||||||||| Sbjct 634724 GTCAGGTTCAACAGAGTCCTCTTCATCCACAGACTTTGCCAAACCA-TTCTCTTGGCTGT 634782 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||||| ||| | ||| | || ||| ||||| | || ||||||||||| ||| Sbjct 634783 AGTTTCATCAGAAAATAGGTGAAGAGAGTAGGAATACCATTCTTCCATTCATGCATGTCT 634842 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 ||||||||||| |||| |||| || |||||||||||| Sbjct 634843 CTAATTAGATGCTGAGGAATTTAGCCACCTTAAGAGAG 634880 >seq58749 Length=2680103 Score = 93.3 bits (102), Expect = 1e-16 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 || ||| | ||| ||| ||||||| |||| | || | ||| |||||||||| |||| Sbjct 1468207 TTCTGCCCCACAAGAGGTTTCTGTCCTCCCTAAGCTCGCCTCAGGACACCTGTGTTACCA 1468148 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 1468147 TTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 1468102 >seq70241 Length=651318 Score = 91.5 bits (100), Expect = 5e-16 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 |||||| ||| || ||||||||||| || |||||||| |||||| ||| ||||| ||| Sbjct 94952 TGGGAAGCTC-TTCATCCATTCATGTGCA-CACTAATTGGATGACCAGGAATTTGAGTAC 94895 Query 434 CTTAAGAGAGTCATAGTTACTCCCGCC 460 ||||| ||||||||||||||||| ||| Sbjct 94894 CTTAAAAGAGTCATAGTTACTCCTGCC 94868 >seq530 Length=1928495 Score = 91.5 bits (100), Expect = 5e-16 Identities = 92/121 (76%), Gaps = 13/121 (11%) Strand=Plus/Plus Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 |||||||||||| ||||||||||||||||| ||||| | |||||||| | | |||| Sbjct 14949 CTAATTAGATGATAAGGCATTTGGCTACCTTGAGAGATTGTTAGTTACTTTCATCATTTA 15008 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 || ||| ||||||||||||||||||| |||| ||||||||||| | || Sbjct 15009 CC----------AGAA---CTTCACTTTGACATTCAGAACACTAGGCAGAAATCATACTG 15055 Query 526 C 526 | Sbjct 15056 C 15056 >seq76631 Length=1025911 Score = 86.0 bits (94), Expect = 2e-14 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | ||||| ||||||| |||| |||| | |||||||||||| | |||| Sbjct 107124 CTTATGCTCCATAGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCCGTGTTACA 107183 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||| |||| ||| || |||||| ||||||| ||| Sbjct 107184 GTTTGACAGGTGTACCACCCCAGTCAAACTCTCCA 107218 >seq69372 Length=439374 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || | |||| ||||||| ||| |||| ||||||||||||||||||| Sbjct 17463 CTTCTGTTCCATGGGAGGTTTCTGTCCTCTCTGAGCTTGCCTTAGGACACCTGCGTTACT 17522 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| | ||||||| || |||||| ||||| || |||| Sbjct 17523 GTTTGACAGGTGTACTGCCCCAGTCAGACTCCCTACCTGGCACTGTC 17569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633935663360