Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq21172 86.0 1e-14 seq23585 84.2 4e-14 seq63916 77.0 5e-12 seq40920 77.0 5e-12 >seq21172 Length=24160 Score = 86.0 bits (94), Expect = 1e-14 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || |||||||||||||||| Sbjct 13447 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 13505 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||| |||||||||||||||||||||||| Sbjct 13506 AGGATTATGACTGAACGCCTCTAAGTCAGAATCC 13539 >seq23585 Length=371847 Score = 84.2 bits (92), Expect = 4e-14 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| |||| | || |||| || || || || ||||||| ||||| |||||||| Sbjct 154551 TTGGTATTTGTGCTTGGCTGAGGAGCCAATGGGGCAAAGCTACTATCTGTGGGATTATGA 154610 Query 91 CTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||||||||||||||||||| |||| Sbjct 154611 CTGAACGCCTCTAAGTCAGAATCCAACCCAG 154641 >seq63916 Length=1694157 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||| | | ||||| | ||||| | || | || |||| || || | Sbjct 1675647 GTACAAGAGGAACCACAGG-TTCAGGC-ATTTGGTGTATGTGCTTGGCTGAGAAGCCAAT 1675590 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| | |||||||| || || |||||||||||||||||| Sbjct 1675589 GGGGCGAAGCTACCATCCGTGGGATTATGACTAAATGCCTCTAAGTCAGAATCC 1675536 >seq40920 Length=1186382 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| |||| |||||| | ||||| | || | || |||| || | | Sbjct 1146101 GTAGGAGAGGAACTGCGGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGTAAAT 1146158 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||||||||||||| |||||||| ||||| ||||| |||||||||||| Sbjct 1146159 GGGTCAAAGCTACCATCTGTGGGATTATGACTGAATGCCTCCAAGTCAGAATCC 1146212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818586388480