Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq43885 210 7e-52 seq5492 143 8e-32 seq26182 134 4e-29 seq74847 113 1e-22 seq46775 113 1e-22 seq6813 109 2e-21 seq31645 105 2e-20 seq70997 96.9 1e-17 seq43838 96.9 1e-17 seq24380 96.9 1e-17 seq38788 87.8 5e-15 seq71067 86.0 2e-14 seq6730 86.0 2e-14 seq20852 82.4 2e-13 seq43769 80.6 8e-13 seq69546 78.8 3e-12 seq47535 78.8 3e-12 seq36114 77.0 1e-11 >seq43885 Length=2353850 Score = 210 bits (232), Expect = 7e-52 Identities = 182/221 (82%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 8 TTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66 ||||||| ||| | || | ||||| ||||||| ||||| | |||||||||||||| | Sbjct 461466 TTCCAATGACAGGGCCTCGAAAGAATCCTGTATTGTTATTTTTCGTCACTACCTCCCCCT 461407 Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 || |||| |||||||||||| | |||||||||||||||||||||| ||||| |||||||| Sbjct 461406 GTTGGGAGTGGGTAATTTGCACACCTGCTGCCTTCCTTGGATGTGCTAGCCATTTCTCAG 461347 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG-CCA 185 ||||| |||| ||||||||||||| ||||||| | |||| | | |||| | |||| || Sbjct 461346 GCTCCATCTCTGGAATCGAACCCTGATTCCCCATCACCCATGGTCACCAAGATAGGTACA 461287 Query 186 CT-ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 | || |||||||| ||||||||| |||||| |||||||| Sbjct 461286 GTGAT--TACCATCGCAAGTTGATAAGGCAGACATTTGAAT 461248 >seq5492 Length=1073270 Score = 143 bits (158), Expect = 8e-32 Identities = 99/111 (89%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 1006850 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 1006909 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG 112 |||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1006910 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG 1006960 >seq26182 Length=304988 Score = 134 bits (148), Expect = 4e-29 Identities = 85/92 (92%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 92 TGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151 || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 60547 TGTTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCTGGAATCGAACCCTG 60488 Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 ||||||||| |||||| | |||||||||||| Sbjct 60487 ATTCCCCGTCACCCGTGGTCACCATGGTAGGC 60456 >seq74847 Length=1238004 Score = 113 bits (124), Expect = 1e-22 Identities = 94/112 (84%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCTTA 452 ||||| | | ||||||||||||||||| || | ||| |||||||||| | | ||| | Sbjct 824280 CAAATGAGCCATAACTGATTTAATGAGTTATCCACAGATTCACTGTATTGGGAGTGC--A 824223 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||| ||||||||||||||||||||||||| || |||||||||| Sbjct 824222 TACTTAGATATGTATGGCTTAATCTTTGAGACAAGCATGTG-CTACTGGCAG 824172 >seq46775 Length=1724329 Score = 113 bits (124), Expect = 1e-22 Identities = 93/112 (83%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452 |||||| | | |||||||||||||||||| ||| |||||||||||| | || | | Sbjct 597979 ATCAAAGGAGCCATAACTGATTTAATGAGCTATTTGCAGTTTCACTGCACAGTTCATGTG 598038 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||| |||||||||| | ||||||||||||||| |||||||||| Sbjct 598039 TACTTAGATATGGATGGCTTAATATGTGAGACAAGCATATG-CTACTGGCAG 598089 >seq6813 Length=3341543 Score = 109 bits (120), Expect = 2e-21 Identities = 87/104 (84%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 34 CTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTG 93 |||||| || || |||||||| |||||| | ||| ||| | ||||||||| ||||| Sbjct 1296108 CTGTAT---TACTTTTTGTCACTCCCTCCCTGGGTCAGGAGAGAGTAATTTGCCTGCCTG 1296052 Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 |||||||||||| | ||||||||| ||||||||||||||||||| Sbjct 1296051 CTGCCTTCCTTGAAGGTGGTAGCCATTTCTCAGGCTCCCTCTCC 1296008 >seq31645 Length=933769 Score = 105 bits (116), Expect = 2e-20 Identities = 63/66 (95%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 318071 TGGGTAATTTGTGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGGCTCCCTC 318012 Query 135 TCCGGA 140 ||| || Sbjct 318011 TCCAGA 318006 >seq70997 Length=565896 Score = 96.9 bits (106), Expect = 1e-17 Identities = 89/113 (79%), Gaps = 15/113 (13%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA---CTGTATAGATTGCTT 451 |||| ||| ||||||||||||||||||||| | |||| || ||| | Sbjct 137380 CAAAGGAACCATAACTGATTTAATGAGCCATCCACAGTACCAGCCCTG-----------T 137332 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 137331 GTACTTAGACATGCATGGCTTAATCTTTGAGATAAGCATATG-CTACTGGCAG 137280 >seq43838 Length=1620096 Score = 96.9 bits (106), Expect = 1e-17 Identities = 118/153 (77%), Gaps = 11/153 (7%) Strand=Plus/Plus Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGT-ACT-ATCAAATAAACGATAACTGAT 413 ||||||| ||||| |||||||| | || | || | | | |||| ||| ||||||||| Sbjct 1456744 TCTAGAACTACCA--GTTATCCAAGAAGAAGAGTGAGTGACCAAAGGAACCATAACTGAT 1456801 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT--ACTTAGACATGCATGGCT 471 | ||||||| | | |||||||||||| | || ||| |||||||||||||| | | Sbjct 1456802 T-AATGAGCAAGCCACAGTTTCACTGTTTCA---GCCTATGCACTTAGACATGCATAGGT 1456857 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| |||||||||||||| || || ||||||| Sbjct 1456858 TAATTTTTGAGACAAGCATGTG-CTGCTGGCAG 1456889 >seq24380 Length=2264173 Score = 96.9 bits (106), Expect = 1e-17 Identities = 82/100 (82%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||||||||||||| |||||||||||| |||| | | ||||||||||| Sbjct 748124 ATAACTGATTTAATGAGCTGTTCGCAGTTTCAGTGTACTGGCCATATGTACTTAGACATT 748183 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||| ||||| |||||| || Sbjct 748184 CATAGCTTAATCTTTGAGACAAGTATATG-TTACTGGTAG 748222 >seq38788 Length=418965 Score = 87.8 bits (96), Expect = 5e-15 Identities = 105/142 (74%), Gaps = 8/142 (6%) Strand=Plus/Plus Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||||||||||||||| |||||| |||| || ||||||||||||||| || || ||||| Sbjct 195928 CCTGCTGCCTTCCTTGAATGTGGGAGCCATTAATCAGGCTCCCTCTCCTGACTCAAACCC 195987 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209 | ||||||| | || | ||| |||| | | |||||||| || | |||| Sbjct 195988 TGATTCCCCATCAC----TCATAAGTAGGTATGAGA----ACTACCATCAAAGGCTGATT 196039 Query 210 GGGCAGAAATTTGAATGAACCA 231 |||| | | ||||||||| || Sbjct 196040 AGGCAAACACTTGAATGAATCA 196061 >seq71067 Length=1635474 Score = 86.0 bits (94), Expect = 2e-14 Identities = 86/110 (78%), Gaps = 5/110 (5%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| |||| |||| |||||||||| |||||||||||| || || | | Sbjct 1610707 CAAAGGAACCGTAACCGATTCTGTGAGCCATTC--AGTTTCACTGTACTGACTGTGTGTT 1610650 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| |||||||| ||||| |||||||| |||||||||| Sbjct 1610649 CTTAGACATGCACGGCTTAATATTTGAAACAAGCAT---GCTACTGGCAG 1610603 >seq6730 Length=1569464 Score = 86.0 bits (94), Expect = 2e-14 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 ||||| || || |||| ||| |||||||||||| | | ||| | ||||||||||| Sbjct 769377 AACTGCTTGAAAGAGCTATTTGCAGTTTCACTGCACTGGTTGTGCGTT-TTAGACATGCA 769319 Query 467 TGGCTTAATCTTTGAGACAAGCATATG 493 ||||||||||||||||||||||||||| Sbjct 769318 TGGCTTAATCTTTGAGACAAGCATATG 769292 >seq20852 Length=254887 Score = 82.4 bits (90), Expect = 2e-13 Identities = 103/137 (75%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 371 GTTATCCA--TGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428 || ||||| || | ||| | || | |||| ||| |||||||||| ||||| | || Sbjct 112220 GTAATCCAGTTGCAATAATGAACAACCAAAGGAACTGTAACTGATTTGTTGAGCTACACG 112161 Query 429 CAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 ||||||||||||| || || | | ||| |||||||||||||||||||||||| Sbjct 112160 CAGTTTCACTGTACCAG---GC----AGGCATACACGCATGGCTTAATCTTTGAGACAAG 112108 Query 488 CATATGACTACTGGCAG 504 |||| | |||||||||| Sbjct 112107 CATA-GGCTACTGGCAG 112092 >seq43769 Length=1691439 Score = 80.6 bits (88), Expect = 8e-13 Identities = 79/100 (79%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||| |||||| ||||||| ||| || |||||||| | || | ||| || |||| Sbjct 1317052 ATAGCTGATTCAATGAGCTATTAGCTGTTTCACTACTGGCAGTG--TGTACCTACACATA 1316995 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||| ||||||||||||||| |||||||||| Sbjct 1316994 CCTGGCTTAATCTCTGAGACAAGCATATG-CTACTGGCAG 1316956 >seq69546 Length=341051 Score = 78.8 bits (86), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 |||||||||||||||| || ||||||||| |||| | || || | || ||||| Sbjct 21524 AACTGATTTAATGAGCTATCTGCAGTTTCATTGTACTG---GCC-ATGCACAGTTATGCA 21579 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||| |||||| ||||||||| Sbjct 21580 CGGCTTAATCTTTGAGACAACCATATG-TTACTGGCAG 21616 >seq47535 Length=2671866 Score = 78.8 bits (86), Expect = 3e-12 Identities = 72/91 (79%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| | | ||| ||||| ||||||||||||| ||| ||| ||||||||||| Sbjct 131315 AAAGAGTCTTATATTGTTATTTTCCATCACTACCTCCCCTGGTCAGGAGTGGGTAATTTG 131374 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 | | | ||||| ||| ||||||||||||||| Sbjct 131375 CACTCTTGCTGTCTTTCTTGGATGTGGTAGC 131405 >seq36114 Length=1464811 Score = 77.0 bits (84), Expect = 1e-11 Identities = 84/110 (76%), Gaps = 5/110 (5%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| |||| |||| |||| |||||||| | ||||||||| |||| | | ||| Sbjct 13492 CAAAGAAACCATAATTGATCTAATGAGCTGTCTGCAGTTTCATTGTACTGGCCACACATA 13433 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| |||||||| ||||||||||||||||||||| ||||||||| Sbjct 13432 CTTTC----GCATGGCTGAATCTTTGAGACAAGCATATG-TTACTGGCAG 13388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509232158720