Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_031264.1 Length=46877 Score E Sequences producing significant alignments: (Bits) Value seq38074 333 8e-87 seq57075 147 7e-31 seq26274 95.1 4e-15 >seq38074 Length=177082 Score = 333 bits (368), Expect = 8e-87 Identities = 395/532 (74%), Gaps = 4/532 (1%) Strand=Plus/Minus Query 9111 CGTGAAGTCATTCAGTATGCCGATGCTTGGACGCAAGCAGGCAATATGATCCGGGCAGCG 9170 |||||| | |||||||||||||||| |||||| |||| ||||| | |||| |||| || Sbjct 125763 CGTGAAATTGTTCAGTATGCCGATGCGTGGACGGAAGCCGGCAACAAGATCAGGGCCGCC 125704 Query 9171 GCGGCTTCGGCTGGCGTTCAGGTGCGCACTCTCGAACAGTTGAATGCGGGCGCTAACGAC 9230 || ||||| || |||||||||| || | || |||| |||| | ||||| ||||| Sbjct 125703 GCCGCTTCCGCGGGCGTTCAGGCTCGATCACTTACACAGCTGAAGGATGGCGCCAACGAG 125644 Query 9231 GCTCGCGTGAGCCT--GACAGACTATGCCGATCTTTACGCTAGGCTCATTCGTTCCGCGT 9288 || || || | | | ||||| | |||||| ||||| | || || || || |||| Sbjct 125643 GCCCGTACC-GCTTTCGGC-GACTACGTCGATCTGTACGCCCGCCTTATCCGGTCGGCGT 125586 Query 9289 CCGGTGTTGCGAAATCTGAAGAAGAAATCGCACTCGCGACCAACCTTGTATCCAAGGCAT 9348 | || || |||||||| ||| | || || || || || || | || || ||||||| Sbjct 125585 CTGGAGTGGCGAAATCCGAACAGGAGATTGCGACAGCTACTGACATCGTCTCGAAGGCAT 125526 Query 9349 TCAAAGCTGGTGGCGCATCCGCGCAAGAACAGGCCGCAGGCATTCTCCAGCTTGGTCAAG 9408 |||| || ||||| ||||| || || |||||||| ||||||||||| ||| | || |||| Sbjct 125525 TCAAGGCCGGTGGAGCATCTGCACAGGAACAGGCGGCAGGCATTCTGCAGTTGGGGCAAG 125466 Query 9409 CGCTCGGTTCTGGCGTTCTCCAAGGTGACGAACTTCGCTCCATTCGCGAAAATGCGCCTA 9468 | || |||||||||||||| ||||| || ||||||||||| | |||||||| ||||||| Sbjct 125465 CTCTTGGTTCTGGCGTTCTGCAAGGCGATGAACTTCGCTCTTTGCGCGAAAACGCGCCTA 125406 Query 9469 TCGTTGCGAAGGCTATCGCTGATGAGTTTAAGGTCTCAATTTCTGGTCTTAAGCAACTCG 9528 | |||| |||| ||||||| ||| || ||| ||||| | || || || | || | Sbjct 125405 TTCTTGCACAGGCCATCGCTGCTGAATTCAAGACGACAATTGCGGGCCTGAAAGACCTTG 125346 Query 9529 GTGCAGATGGGAAGCTAACGTCTGATCGTGTTTTCCGCGCAATCATCAATGCACAGAAGG 9588 | ||||| || ||||| ||||||||||| || || |||||| | || || |||||| Sbjct 125345 GCGCAGAAGGAAAGCTTACGTCTGATCGCGTGTTTAAGGCAATCTTGAACGCGCAGAAGC 125286 Query 9589 GCATCGAAGAGCAGTTTCGTGCGACTAACACCACGATTGGCGATAGCTTCAC 9640 ||||| | |||||| || |||||| | || || | |||||||||||| Sbjct 125285 CTATCGAGGCTCAGTTTGCAGCTACTAACGCGACTATCGCCGATAGCTTCAC 125234 >seq57075 Length=390000 Score = 147 bits (162), Expect = 7e-31 Identities = 263/378 (70%), Gaps = 12/378 (3%) Strand=Plus/Plus Query 43753 CATCGTTGACGGTCGCTCATATCCTGGCATTCGGGAAACGAGGGCAGTCGTCACGATGAG 43812 ||| || ||||| || || ||||||||||||||||| ||| |||| ||| ||| || Sbjct 92848 CATTGTGGACGGCCGGTCTTATCCTGGCATTCGGGAGACGCGGGCTGTCCACACCTTGCA 92907 Query 43813 CCGGATCATACAGGCAAAAGGGGAGGATCATTTTCGGATGGTCCTCTCTACCGTTGCGGA 43872 | | | | |||||||||| ||||||||||| || | || | || || || || || Sbjct 92908 CAGAGTTCTTGAGGCAAAAGGCGAGGATCATTTCCGCCTCGTGTTGTCCACAGTGGCCGA 92967 Query 43873 GACCGAGAATAATCAGGGATATATCGACAAGTATCTGCTTTGGGCCGTTAGCGATCTGGT 43932 || | ||||||||||| || ||||||||| || || | ||||| ||||| || || Sbjct 92968 AACGAATAATAATCAGGGCTACATCGACAAGAATTTGATAAACGCCGTCAGCGACCTCGT 93027 Query 43933 CACGGTGTGCAACTCTATCGTGG--AGAGCC---GCCCGATAGAATGGCTGGAATGCTTC 43987 | || || ||| | |||| | | || | ||||||||||||||||| Sbjct 93028 GGAGCAGT----TTCAGGCGTTGATAGAGGCAAAGACCTCT-GAATGGCTGGAATGCTTT 93082 Query 43988 GATGCTGCGCCGGTAGCTCAATTGCAGTATATTGC-GAGACAACTTCCCCATCAGCGATT 44046 || | || || || | |||||||| | || |||| ||| ||||||||| | Sbjct 93083 GACGAAGCCCCTGTGGGCGAATTGCAGGTAGTCGCAAAGAC-GGTTCGCCATCAGCGTTA 93141 Query 44047 TGCCCTAGTCGGAATGCTCTTTGAGCGTGTGGTGAGAAGGTTTGGACCGAATGCCGCGCA 44106 |||||| ||||| ||||| || || |||||| | ||||| || ||||| || | || Sbjct 93142 TGCCCTTGTCGGCATGCTGGCGGAACGAGTGGTGCGTAGGTTCGGCCCGAACGCAGGACA 93201 Query 44107 AGGCGACCTGTTTGACGA 44124 ||||| || |||||||| Sbjct 93202 GGGCGATCTCTTTGACGA 93219 Score = 105 bits (116), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 44596 TGGTGCCGACTGGAAGGCATTCACGAAGAGACCGGAAGACGGCGTAAAGATCGGGCAATT 44655 |||||||| ||||||||| || || ||| ||| ||| || ||| | |||| ||| Sbjct 93682 TGGTGCCGGTCGGAAGGCATCCATGAGATGACAGGATCACGCCGAAAAAACAGGGCGATT 93741 Query 44656 GCAATTATAAAACAGCATGTTATGCGGGACGGCTCGCCCAATGCAGAAAGTGGCCATTCT 44715 | || || ||||| || || | |||| | || ||||| |||| |||||||| Sbjct 93742 GATGTTCTAGAACAGTATCTTGTTCGGGGTAGTTCATCCAATAACGAAACTGGCCATTTC 93801 Query 44716 TGGGTGTTGCCAACTGGACCCGATTTCGAGCATATTCCTGATACAGTCGCAGTAGACGCG 44775 |||||||||| ||| || | ||||||||||||| | || | |||||| ||||||| Sbjct 93802 GGGGTGTTGCCTGTTGGCCCGGTTTTCGAGCATATTTCAGACAACATCGCAGCAGACGCG 93861 Query 44776 CCGACATCGAAAGAGATGGTCAGATTTGAGCGAGATGCTGAGAC 44819 |||| |||||| | | | || ||||| |||||||| || Sbjct 93862 CCGAGCAAGAAAGACAAG---AATTTCGAGCGTGATGCTGACAC 93902 Score = 80.6 bits (88), Expect = 8e-11 Identities = 112/149 (75%), Gaps = 6/149 (4%) Strand=Plus/Plus Query 34282 TGCTTTGGGGTGCTGAATGACACAATGTCTTGGGTCTGCTCGGAGGTTCCCGCCAAGATC 34341 ||||| | || |||||| ||||| ||||||||||| |||||||||||||||||||| Sbjct 83006 TGCTTCGAGGCGCTGAAAAGCACAAAATCTTGGGTCTGATCGGAGGTTCCCGCCAAGATG 83065 Query 34342 GAGTGTTTTCTAAGCGCAAAAGAAGCGGTCTTTTTACGGATTTGACCCGTTTTCACCGAT 34401 | ||| | || | | ||||| | |||||| ||| | || ||| |||| | ||||| Sbjct 83066 GTGTG-TCTCAAGGTGCAAAGGCAGCGGT-TTTCTCAGGGCTTGTCCCG-CGCCGCCGAT 83122 Query 34402 CAC-CCGGCGCATGAAATCCACA-GCGGT 34428 ||| ||||| || ||||| || ||||| Sbjct 83123 CACTCCGGCAAAT-CAATCCCCACGCGGT 83150 >seq26274 Length=22863 Score = 95.1 bits (104), Expect = 4e-15 Identities = 188/275 (68%), Gaps = 10/275 (4%) Strand=Plus/Plus Query 43754 ATCGTTGACGGTCGCTCATATCCTGGCATTCGGGAAACGAGGGCAGTCGTCACGATGAGC 43813 ||||| ||||||||| | |||||||| ||||| | || | ||||| | ||| | | Sbjct 16086 ATCGTGGACGGTCGCGCCTATCCTGGTATTCGTCAGACACGCGCAGTTGCAACGCTTGAC 16145 Query 43814 CGGATCATACAGGCAAAAGGGGAGGATCATTTTCGGATGGTCCTCTCTACCGTTGCGGAG 43873 || | | || || || |||| || |||||| |||| | || || |||| ||| Sbjct 16146 AGGGTTCTCCATAAGAATGGAGAGGCACACTTTCGGCTGGTGATGTCCACGATTGCCGAG 16205 Query 43874 ACCGAGAATAATCAGGGATATATCGACAAGTATCTGCTTTGGGCCGTTAGCGATCTGGT- 43932 || | |||||||||||| ||||||| | ||||| ||| ||||||||||| || || Sbjct 16206 ACGCAAAATAATCAGGGACATATCGATGAATATCTCATTTTCGCCGTTAGCGACCTCGTG 16265 Query 43933 ---CACGGT-GTGCAACTCTATCGTGGAGAGCCGCCCGATAGAATGGCTGGAATGCTTCG 43988 | || ||| | ||||| ||| | ||| | | ||||||||| ||| | Sbjct 16266 GAGAGCTGTCGTGGGA--TTATCGAGGAAA---ACCCCACACTTTGGCTGGAAGTCTTTG 16320 Query 43989 ATGCTGCGCCGGTAGCTCAATTGCAGTATATTGCG 44023 | || || || || | ||| |||||||||||||| Sbjct 16321 ACGCAGCACCTGTGGGCCAACTGCAGTATATTGCG 16355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149747179523760