Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq10432 174 2e-41 seq2896 136 6e-30 seq1 102 1e-19 seq2264 80.6 4e-13 seq5221 77.0 5e-12 >seq10432 Length=5242 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 3151 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 3208 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 3209 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 3268 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 3269 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 3328 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 3329 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 3381 >seq2896 Length=17782117 Score = 136 bits (150), Expect = 6e-30 Identities = 169/226 (75%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || ||||| |||| | | |||||| |||||| | Sbjct 9687197 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTTC-TGACCCACACTTACTGGGAATT-C 9687254 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 ||| | | | || ||| ||||| | ||||||||||| | || ||| | | || Sbjct 9687255 CTCACTCATGGGGAATAATGGCAATCCCCCATCCCCATCACAAATGGGATTCAATGGGTT 9687314 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| | || ||| | || || ||| || ||||||||||||||| Sbjct 9687315 ACCCGCGCCTGCCAGCGTAGGCTAGGCACACGCTGAGCCAGTCGGTGTAGCGCGCGTGCA 9687374 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 9687375 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 9687419 >seq1 Length=51448160 Score = 102 bits (112), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCG 64 ||||||||||||| || ||| ||| | ||| ||||| || || ||| |||||||| | | Sbjct 875855 AAAGGGCAGGGACTTAATCACCGCAAACTT-ATGACCTGCACTCACTGGGAATTTCTT-G 875912 Query 65 TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATTACCC 123 || | | || ||||||||| |||||||||||| || || || | |||| Sbjct 875913 TTCATGGGCAGTAATTGCAATCCCGGGTCCCCATCACGAATGGTGTTCCATGGGTTACTG 875972 Query 124 GGACCTGTCGGCCAAGGTGATAG--ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 | |||| ||| | || ||| || | ||| | ||||||| | |||||| || Sbjct 875973 GAGCCTGCTGGCATA--TGGTAGGCACACACTGAGCCCGCCAGTGTATCTTGCGTGCAGC 876030 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || |||| |||||||||||||||||||||||||||| ||| || ||||| Sbjct 876031 CCCAAACAGCTAAGGGCATCACAGACCTGTTATTGCC-CAATCTCGGGTGGC 876081 >seq2264 Length=4085035 Score = 80.6 bits (88), Expect = 4e-13 Identities = 81/103 (79%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||| || ||||| | ||||| ||||| || |||||| |||||| | Sbjct 1299320 GTACAAAGGGTAGGGACTTAATCAACACAAGCTT-ATGACCTGCACTTACTGGGAATT-C 1299377 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 ||||| | | || ||||||||| | ||||||||||||| Sbjct 1299378 CTCGTCCATGGGGAATAATTGCAATCCCCGATCCCCATCACGA 1299420 >seq5221 Length=31047559 Score = 77.0 bits (84), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 5/97 (5%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||||||||||| ||||| ||| | |||||||||| |||||||||||||||||| ||| Sbjct 15196675 TCAGTGTAGCGTGCGTGTAGCCGTGGACATCTAAGGTAATCACAGACCTGTTATTG-CTC 15196733 Query 221 AAACTTCCGTGGCCTAAAAGGCCA--TCTCCCTCGAA 255 || || ||||| ||||||| |||||||| || Sbjct 15196734 AATCTCGGGTGGC--TGAAGGCCACTTCTCCCTCTAA 15196768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751921496840