Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq10432 174 3e-41 seq2896 159 6e-37 seq2319 77.0 6e-12 >seq10432 Length=5242 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 4084 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 4025 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 4024 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 3966 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 3965 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 3906 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 3905 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 3846 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 3845 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 3809 >seq2896 Length=17782117 Score = 159 bits (176), Expect = 6e-37 Identities = 187/248 (75%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG-CCTTTGCTC--GAATACATTAGCAT 130 |||||||||||||||||||||||||||||||||| || ||| | |||| ||| Sbjct 9688085 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAACCTCCTGGATACCACAGCTA 9688026 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| ||||||||||||||||||||| | || | | ||||| Sbjct 9688025 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 9687967 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | |||||| | ||||| | |||||||||||||||||| Sbjct 9687966 TAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCAGC 9687907 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| || | |||||||| || ||||| ||||||||||||||| | |||||||| Sbjct 9687906 GCAAGATGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATC-GAGAACGAAA 9687848 Query 311 GTTAGGGG 318 || || || Sbjct 9687847 GTCAGAGG 9687840 >seq2319 Length=1763487 Score = 77.0 bits (84), Expect = 6e-12 Identities = 61/72 (85%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| |||||| | | |||||||||||||||||||||||| Sbjct 674476 ATGCTCTTAGCTGAGTGTCCCGCGGAGCCCAAAGCGTTTACTTTGAAAAAATTAGAGTGT 674535 Query 98 TCAAAGCAGGCC 109 |||||||||||| Sbjct 674536 TCAAAGCAGGCC 674547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915101378048