Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2896 140 1e-30 seq4555 89.7 2e-15 >seq2896 Length=17782117 Score = 140 bits (154), Expect = 1e-30 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| |||| | |||||||| |||||||||||| |||| |||| Sbjct 9682860 GAGCATGAGCACACGTGTTAGGACTCAAAAGATGGCGAACTATGCCTGGGCAGGGCGAAG 9682801 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 9682800 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACC 9682741 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 9682740 TGGGTATAGGGGCGA 9682726 Score = 107 bits (118), Expect = 8e-21 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 48 TTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA 107 ||| ||||||||||||| | || ||| |||||| | | ||||| |||||||| ||| Sbjct 9684028 TTGCTTGGGAATGCAGCCCAGAACGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCAC 9683969 Query 108 GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTT 167 ||||||||||| ||||||| || | ||||| ||||||| |||||| | |||||||| Sbjct 9683968 GAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTT 9683909 Query 168 AAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || | |||||| |||| | ||| || Sbjct 9683908 CAACAAGGTGTGAAACTGTTAAGAGGTAA 9683880 >seq4555 Length=13228128 Score = 89.7 bits (98), Expect = 2e-15 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 9810486 GACCCAAAAGATGGTGAACTATGCCTGGGCAGGATGAAGCCAGAGGAAACTCTGGTGGAG 9810427 Query 630 GCTCGCAGCGGT 641 | || ||| || Sbjct 9810426 GTCCGTAGCAGT 9810415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079768854800