Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq10432 244 2e-62 seq2896 212 1e-52 seq4336 98.7 2e-18 seq5221 93.3 7e-17 seq3229 93.3 7e-17 seq1 93.3 7e-17 >seq10432 Length=5242 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 3309 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 3367 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 3368 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 3426 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 3427 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 3486 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 3487 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 3546 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 3547 ATCAATCTGTC 3557 >seq2896 Length=17782117 Score = 212 bits (234), Expect = 1e-52 Identities = 201/253 (79%), Gaps = 13/253 (5%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||| ||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 9687355 GTCGGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 9687413 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG-T 133 ||| || | | ||| | ||| | |||||||||||||| | | || | | Sbjct 9687414 CAATCT-CGGGTAACTGAACACCACTCATCCCTCTAAGAAGCTGGAGGACGCTGATCGCT 9687472 Query 134 CGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 || |||| ||| |||||| | | ||||||||||||||||||||||||||| Sbjct 9687473 CG--GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAG 9687530 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 9687531 ACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG 9687590 Query 246 CTATCAATCTGTC 258 |||||| || ||| Sbjct 9687591 CTATCAGTCCGTC 9687603 >seq4336 Length=13512400 Score = 98.7 bits (108), Expect = 2e-18 Identities = 92/116 (79%), Gaps = 7/116 (6%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| |||| ||| ||||||||||||||||| ||||| | Sbjct 5334309 CTAGTTAGCATGCCAGAGTCTCATTCGGTATAGGAATTAACCAGACAAACGTTTCCACTA 5334250 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 | |||||| ||||| |||||||| |||||||||||||||||||||| |||| Sbjct 5334249 ATTAAGAA------TGCAC-ACCACCCACAGAATCAAGAAAGAGCTATCAACCTGT 5334201 >seq5221 Length=31047559 Score = 93.3 bits (102), Expect = 7e-17 Identities = 155/219 (71%), Gaps = 14/219 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||| ||||| ||| | |||||||||| |||||||||||||||||| || Sbjct 15196674 GTCAGTGTAGCGTGCGTGTAGCCGTGGACATCTAAGGTAATCACAGACCTGTTATTG-CT 15196732 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAAC---- 127 ||| | || |||||| | |||| | |||||||||||| | | ||||| Sbjct 15196733 CAATC-TCGGGTGGCTGAAGGCCACTTCTCCCTCTAAGAAGTTGGAGGATGCCAACTGTT 15196791 Query 128 CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | ||| | | ||||| | || |||| || ||||| ||||||||| |||| Sbjct 15196792 CAGCGGTTATGTAAC-AGTTAGCGTGCTAGAGTCTTATTTGTTATTGGAATTAACTAGAC 15196850 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226 | || |||| ||||||| | || |||| |||||| Sbjct 15196851 AGATTGCTCC----ACTAAGATCAGCTGTGCAACACCAC 15196885 >seq3229 Length=19844855 Score = 93.3 bits (102), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 14/229 (6%) Strand=Plus/Plus Query 37 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC 96 |||| | || ||||||||||| |||||||||||| || ||| | |||||| | | Sbjct 1355102 CCAGGATATTTAAGGGCATCAGAGACCTGTTATTTGCTTAAATCTTGGGTGGCTGAACAC 1355161 Query 97 CAATAGTCCCTCTAAGAAGCC---AGCCACCAAC--CATAGTCGATGGGG--CTATTTAG 149 || | |||||||||||||| || || || | | | | || ||| ||| Sbjct 1355162 CACTGGTCCCTCTAAGAAGTTGGAAGATGCCCACTTCTTGGGGGTTGCATAACTAAGTAG 1355221 Query 150 CAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAA 209 || | | |||| || ||||| ||||||||||||| || |||||||||||| Sbjct 1355222 CATGCCAGAGTCTTGTGTGTTAT------TAACCAGACAAATTGCTTTACCAACTAAGAA 1355275 Query 210 CGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||| |||||| |||||||||| || || | |||||| |||||| Sbjct 1355276 TGGCTATG-ACCACCCCCCATAGAATTGAGGAACATCTATCAGTCTGTC 1355323 >seq1 Length=51448160 Score = 93.3 bits (102), Expect = 7e-17 Identities = 84/103 (82%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 ||| ||||||| | |||||| |||| |||| ||||||||||||||||||||||||||| Sbjct 876007 CCGCCAGTGTATCTTGCGTGCAGCCCCAAACAGCTAAGGGCATCACAGACCTGTTATTGC 876066 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | ||| | || |||||| | |||| | |||| ||||||||| Sbjct 876067 C-CAATC-TCGGGTGGCTGAATGCCATTTGTCCTTCTAAGAAG 876107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796716820056