Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2896 286 6e-75 seq5333 217 3e-54 seq6332 212 1e-52 seq1341 107 3e-21 >seq2896 Length=17782117 Score = 286 bits (316), Expect = 6e-75 Identities = 239/291 (82%), Gaps = 5/291 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||| ||| | |||||||| ||| || ||||||||||||||||||||||||||||| Sbjct 9657001 TACTGAGCAGGATTACCAT---GGCAACA--CATCAGTAGGGTAAAACTAACCTGTCTCA 9657055 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | |||||||||||||||| | |||||| ||||||||||||||||||| |||| | Sbjct 9657056 CAATAGTCTAAACCCAGCTCATGATCCCTACTAGTGGGTGAACAATCCAATGCTTGGTAA 9657115 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||| Sbjct 9657116 ATTCTGCTTCATAATGATAGGAAGAGCCAACATCAAAGGATCAAAAAGCAACATCGCTAT 9657175 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||| |||||| |||||||||||||||||||||||||||||||||| |||||| || | Sbjct 9657176 GAACACTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTT 9657235 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 ||| | | || | ||||||| |||| | |||||| ||| ||||| Sbjct 9657236 AAAACCCCAAAGGTCAGAAGGATCCTGAGGCTCCGCTTTCACGGTCTGTAT 9657286 >seq5333 Length=12246244 Score = 217 bits (240), Expect = 3e-54 Identities = 162/190 (85%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 8712862 ATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAA 8712921 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 8712922 AAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 8712981 Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284 ||| |||||| || | ||| | | || | |||||||| ||||| | | |||| || Sbjct 8712982 CTGACACCTCCTGCTTAAAACCCCAAAGGTCGGAAGGATCGTGAGGCCCCGCCTTCACGG 8713041 Query 285 TTTGTATTCA 294 | |||||||| Sbjct 8713042 TCTGTATTCA 8713051 >seq6332 Length=48489660 Score = 212 bits (234), Expect = 1e-52 Identities = 207/266 (78%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||| ||||| |||||||||| |||| || ||||||||||||||||| Sbjct 1121519 TCATCAGTAGGGTGAAACTCACCTGTCTCACAACGGAGAAATCCCAGCTCACGTTCCCTG 1121578 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| |||| |||| |||||| | ||||||||||||| | Sbjct 1121579 TTAGTGGGTGAACAATCCAATGCTTGGTAAATTGTGCTTCACAACGATAGGAAGAGCCAA 1121638 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT--TAT 208 | | ||||| ||||||| | |||||||||| |||| || ||||| | |||| ||| Sbjct 1121639 CGGCAAAGGACGGAAAAGCAGCATCGCTATGAATGCTTTGCCACCACAGGTCAGTTATAT 1121698 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268 ||| |||||||||||||| |||||| | | ||| | | || | ||||||| | Sbjct 1121699 ACCTCTGGTAACTTTTCTGACACCTCCTACTTAAAACTCAAAAGGTCAGGAGGATCGTGA 1121758 Query 269 GGCCACACTTTCATGGTTTGTATTCA 294 |||| |||||||| || |||||||| Sbjct 1121759 GGCCCCACTTTCACAGTCTGTATTCA 1121784 >seq1341 Length=25394359 Score = 107 bits (118), Expect = 3e-21 Identities = 131/173 (76%), Gaps = 8/173 (5%) Strand=Plus/Plus Query 56 TCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115 ||||| || || || | |||| |||| || ||||||| ||||||||||||||| || Sbjct 8523205 TCTCACGATGGCCTGATCCCACTTCACACTCT-TATTAGTAGGTGAACAATCCAACACTG 8523263 Query 116 ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA-ACGT 174 | |||||||| || || ||||||| || ||| ||||| |||||||| | || Sbjct 8523264 GGTAAGGTCTGCTTC---ATAAT--GAAGAGCTGATATCTAAGGACTAAAAAGCAGAAGT 8523318 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 ||||||||| |||||| |||| ||||||||| |||||||||||||||| Sbjct 8523319 -GCTATGAACACTTGGCCAACACATTGCAGTTATCCTTGTGGTAACTTTTCTG 8523370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854307929856