Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq10432 91.5 9e-17 seq2264 82.4 5e-14 seq2896 77.0 2e-12 >seq10432 Length=5242 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 3111 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 3168 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 3169 TAAT-CAACGCAAGCT 3183 >seq2264 Length=4085035 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||| |||||| Sbjct 1299280 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGTAGGGACT 1299337 Query 109 TAATACAACGCAAGCT 124 |||| |||| |||||| Sbjct 1299338 TAAT-CAACACAAGCT 1299352 >seq2896 Length=17782117 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || || |||||| ||||| ||||| ||||||||||||||||||| Sbjct 9687157 CTCACTAAACCATC-CAATCAGTAGTA-GCGACAGGCGGTGTGTACAAAGGGCAGGGACT 9687214 Query 109 TAATACAACGCAAGCT 124 |||| ||| ||||||| Sbjct 9687215 TAAT-CAATGCAAGCT 9687229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300769611680