Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq10432 197 3e-48 seq2896 150 3e-34 seq1 102 2e-19 seq2264 91.5 3e-16 seq5221 73.4 7e-11 >seq10432 Length=5242 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 3407 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 3350 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 3349 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 3290 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 3289 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 3230 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 3229 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 3170 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 3169 AAGTCCCTGCCCTTTGTA 3152 >seq2896 Length=17782117 Score = 150 bits (166), Expect = 3e-34 Identities = 168/223 (75%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct 9687419 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 9687361 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 || ||| | || || || | | ||| || || ||| |||||| | | || | Sbjct 9687360 ACCGACTGGCTCAGCGTGTGCCTAGCCTACGCTGGCAGGCGCGGGTAACCCATTGAATCC 9687301 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | | ||| ||||||| | | ||||| |||||| | | | | ||||||| || |||||| Sbjct 9687300 CATTTGTGATGGGGATGGGGGATTGCCATTATTCCCCATGAGTGAGGAATTCCCAGTAAG 9687241 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | |||| ||| || ||||||| |||||||||||||||| Sbjct 9687240 TGTGGGTCAGAAGCTTGCATTGATTAAGTCCCTGCCCTTTGTA 9687198 >seq1 Length=51448160 Score = 102 bits (112), Expect = 2e-19 Identities = 180/256 (70%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||| |||| | ||| | |||| || | ||| |||||||||||||||||| Sbjct 876107 CTTCTTAGAAGGACAAATGGCATTCAGCCACCCGA-GATTG-GGCAATAACAGGTCTGTG 876050 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||| |||| |||| |||||| | ||||||| | | || | || | | Sbjct 876049 ATGCCCTTAGCTGTTTGGGGCTGCACGCAAGATACACTGGCGGGCTCAGTGTGTGCCTAC 875990 Query 191 CCTTGGCCGGAAGG-TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 | | ||| | ||| || | | | || | || | ||||| |||||| | ||| Sbjct 875989 CATATGCCAGCAGGCTCCAGTAACCCATGGAACAC-CATTCGTGATGGGGACCCGGGATT 875931 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||| ||| | | ||| || ||| || ||| || || ||||| || ||| |||| Sbjct 875930 GCAATTACTGCCCATGAACAAGAAATTCCCAGTGAGTGCAGGTCATAAGTTTGCGGTGAT 875871 Query 310 TACGTCCCTGCCCTTT 325 || ||||||||||||| Sbjct 875870 TAAGTCCCTGCCCTTT 875855 >seq2264 Length=4085035 Score = 91.5 bits (100), Expect = 3e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | | |||||||||||| | | | ||||||||| || |||||| || Sbjct 1299420 TCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGGACGAGGAATTCCCAGTAAGTGC 1299361 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||| | |||||||| |||||| ||||||||| Sbjct 1299360 AGGTCATAAGCTTGTGTTGATTAAGTCCCTACCCTTTGTA 1299321 >seq5221 Length=31047559 Score = 73.4 bits (80), Expect = 7e-11 Identities = 79/101 (78%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 15196772 CTTCTTAGAGGGAGAAGTGGCCTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 15196715 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 || |||||||||| | ||| ||||| |||||||||||| Sbjct 15196714 ATTACCTTAGATGTCCACGGCTACACGCACGCTACACTGAC 15196674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947097929728