Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq920 423 6e-116 seq6888 379 7e-103 seq5666 304 4e-80 seq1230 203 1e-49 seq2896 165 3e-38 seq2053 120 1e-24 seq4225 113 1e-22 seq1909 109 2e-21 seq3 105 2e-20 seq7444 80.6 9e-13 seq2175 75.2 4e-11 >seq920 Length=9572204 Score = 423 bits (468), Expect = 6e-116 Identities = 266/287 (93%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| || | ||||||||||||||||| Sbjct 9557552 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGAGCCAGACTAGAGTCAAGCTCAG 9557493 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||| ||||||||||||||| |||||||| |||| ||| |||||||||| || | Sbjct 9557492 CAGGGTCTTCCTTCCCCGCTGATTCCACCAAGCCCATTCCTTTGACTGTGGTTTCACTGG 9557433 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 9557432 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 9557373 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 9557372 ACGATGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCTGCCGTTTACCCGCGCTTCA 9557313 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9557312 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 9557266 >seq6888 Length=10648577 Score = 379 bits (420), Expect = 7e-103 Identities = 263/297 (89%), Gaps = 1/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||| ||||| || ||||| | | | ||||||||| ||||||| Sbjct 9659761 CTCCCACTTATTCTACATTTCTCAT-TCTCTTCACCATGCCAGACTAGAGTTTAGCTCAA 9659703 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||| || |||||||| ||||||| ||||||||||||||| ||||||| | Sbjct 9659702 CAGGGTCTTCTTTCTCCTCTGATTCCACCAAGCCTGTTCCCTTGGCTGTGTTTTCGCTGG 9659643 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||||||||||||||||| || ||||||||||| || ||||||||||||| Sbjct 9659642 ATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCATTCATGTGCACCACTAATTAGATG 9659583 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||| |||||||||||| |||||||| |||||||||||||| ||||||| |||| Sbjct 9659582 ACGAGGTATTTGGCTACCTGAAGAGAGTAGTAGTTACTCCCGCCATTTACCCAAGCTTCA 9659523 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 9659522 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 9659466 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||| || ||||||| |||| ||| ||||||||||||||| | ||| Sbjct 9660061 CTTCTGCTCCACAAGAAGTTTCTGTCCTCCCTGAACTCCCCTTAGGACACCTACATTACC 9660002 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| || |||| | ||||||||||||||| || |||| Sbjct 9660001 ATTTGACAGGTGTACCACCCCTGTCAAACTCCCCACCTGGCACTGTC 9659955 >seq5666 Length=11816653 Score = 304 bits (336), Expect = 4e-80 Identities = 246/297 (83%), Gaps = 3/297 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||| |||| |||||| | | ||||||||| |||||||| Sbjct 4774207 CTCCCACTTAT---ACACCTCTTGAGTCTTTTCACTGTGCCAGACTAGAGTGAAGCTCAA 4774263 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 | | || ||||||| ||||||| ||||| || || ||||||||||||||| ||| | Sbjct 4774264 CGGCAACTCATTTCCCCACTGATTCTGCCAAACCTCTTTCCTTGGCTGTGGTTTTGCTGG 4774323 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||||||||||||||||| || |||||||||||| ||| ||||||||||| Sbjct 4774324 ATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCATTCATGCATGTCCCTAATTAGATG 4774383 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 || | |||||||||||| ||||||||||| |||||||| || || |||| | | |||| Sbjct 4774384 ACAAAGCATTTGGCTACTTTAAGAGAGTCTTAGTTACTTCCACCATTTATCAGAGCTTCA 4774443 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| ||||||||||||||||||||| | |||| || || ||||||||||| |||||| Sbjct 4774444 TTGGATTTCTTCACTTTGACATTCACAACACTAGGTAGCAATCACATTGCATCAACA 4774500 >seq1230 Length=25488664 Score = 203 bits (224), Expect = 1e-49 Identities = 220/287 (77%), Gaps = 5/287 (2%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGACTAGAGTCAAGCTCA 295 |||||||||| ||| |||||| || ||||| | | | || || ||||| | ||| Sbjct 11417447 CTCCCACTTAATCTTCACCTCCTGTCTCTCTTCACCATGCCAGGTTTACAGTCAGGTTCA 11417506 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||| |||||||| || | |||| ||||| || | |||||||||| ||||| | | Sbjct 11417507 ACAG--TCTTCTTTGGCCACAGATTTTGCCAAACCA-TCCCCTTGGCTGCAGTTTCACCA 11417563 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||| ||| || || ||| |||| || || |||||||||||| || |||||||||| Sbjct 11417564 GATAATAGGTAAAGAGAGTAGGAACATCATTCATCCATTCATGCATATCCCTAATTAGAT 11417623 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGCGCTT 474 | ||||||||||||||||||||||||||||||||||| ||| | |||||| | || | Sbjct 11417624 GGTGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACACCCATCAATTTACCTGAGCCT 11417683 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||||||||| || |||| |||||| ||| ||||||| ||||||| Sbjct 11417684 CACTGAATTTCTCCATTTTGCCATTCAAAGCCCTGGGCAAAAATCAC 11417730 >seq2896 Length=17782117 Score = 165 bits (182), Expect = 3e-38 Identities = 120/140 (86%), Gaps = 8/140 (6%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||| |||||| ||||| | | | |||||||||||||||||| Sbjct 9657612 CTCCCACTTATTCT--------CAAGTCTCTTCACCACGCCAGACTAGAGTCAAGCTCAA 9657663 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| || | Sbjct 9657664 CAGGATCTTCTTTCCCCGCTGATTCCGCCAAGCCCATTCCCTTGGCTGTTGTTTCACTGG 9657723 Query 357 ATAGTAGATAGGGACAGTGG 376 ||||||||||||||||||| Sbjct 9657724 GTAGTAGATAGGGACAGTGG 9657743 Score = 75.2 bits (82), Expect = 4e-11 Identities = 75/96 (78%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||| | || || | ||||||| |||| |||| || ||||||||||||||| ||| Sbjct 9657322 CTTCTGCCCCACGGGGG-TTTCTGTCCTCCCTGAGCCCGCCTTAGGACACCTGCATTACC 9657380 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCAC 102 ||| |||| ||| ||||| ||||||||||||| Sbjct 9657381 ATTTGACAGGTGTACCGCC----CCAAACTCCCCAC 9657412 >seq2053 Length=2248224 Score = 120 bits (132), Expect = 1e-24 Identities = 69/71 (97%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 342082 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGAT 342023 Query 359 AGTAGATAGGG 369 ||||| ||||| Sbjct 342022 AGTAGGTAGGG 342012 >seq4225 Length=13699901 Score = 113 bits (124), Expect = 1e-22 Identities = 178/254 (70%), Gaps = 27/254 (11%) Strand=Plus/Minus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT--CCCTTGG 341 |||||| ||| |||| |||| || || | |||||| | ||| | | || ||||| | Sbjct 665732 GAGTCATGCTTAACATGGTCCTCCTTGTCAGCTGATCCTCTCAAACTCATTGCCCCTTAG 665673 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT----CGTTAATCCATTCAT 397 |||| |||| |||| | |||| |||||| ||||||| | | ||| Sbjct 665672 CTGTTGTTTGACTAGGTT------------AGTGAGAATCTTGGTCGTTAATTCGTACAT 665625 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 | |||||||||||| ||||||||| ||||||||||||| |||| |||||| | Sbjct 665624 ------CTCTAATTAGATGATAAGGCATTTGACTACCTTAAGAGACTCATGGTTACT-CT 665572 Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 ||| |||| ||| ||||||||||| ||| ||||||| | |||||||||||| Sbjct 665571 GCCATTTA--TTACCTTCATTGAATTTCTTTACTCTGACATTGGATGTACTGGGCAGAAA 665514 Query 518 TCACATTGCGTCAA 531 |||||| | |||| Sbjct 665513 TCACATCACATCAA 665500 >seq1909 Length=2670928 Score = 109 bits (120), Expect = 2e-21 Identities = 128/168 (76%), Gaps = 15/168 (9%) Strand=Plus/Plus Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 ||||||||| |||||| | || |||||||| ||||||| || ||||||| ||| | Sbjct 1076869 AAGCTCAACCAGGTCTT---TGCCTGCTGATTCTGCCAAGCTAATTGCCTTGGCAGTG-T 1076924 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 ||| | |||| ||| ||||| ||||||| | || |||||| || |||||| Sbjct 1076925 TTCCATGGATACTAGGTAGGGGCAGTGGGGGTT--GT------ATTCATAGGCATCACTA 1076976 Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 ||| |||| |||||||||||||| |||| ||||||||||||||||| Sbjct 1076977 CTTA-ATGATGAGGCATTTGGCTATCTTA--AGAGTCATAGTTACTCC 1077021 >seq3 Length=7495345 Score = 105 bits (116), Expect = 2e-20 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||||||||||| |||||||||||| || ||||||| | |||| ||||||||||||||| Sbjct 1876508 ACCTTAAGAGAGGCATAGTTACTCCTGCTGTTTACCTGTGCTTCCTTGAATTTCTTCACT 1876449 Query 492 TTGACATTCAGAGCAC 507 |||||||||||||||| Sbjct 1876448 TTGACATTCAGAGCAC 1876433 >seq7444 Length=14765477 Score = 80.6 bits (88), Expect = 9e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 |||| | || |||| ||||||| |||||||||||| ||||| | ||||||||| ||| Sbjct 8884582 TTCCTTGATGCTTCCAGCAAGCCCAGTCCCTTGGCTGTAGTTTCTCCAGATAGTAGGTAG 8884523 Query 368 GGACAGTGGGAATCTCGTTAATCCATT 394 ||| ||||| |||||| | ||||||| Sbjct 8884522 GGAGAGTGGAAATCTCACTTATCCATT 8884496 >seq2175 Length=3405854 Score = 75.2 bits (82), Expect = 4e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||| |||||||| |||||| || |||||||||||||||||||||| || Sbjct 68624 TTCTTTCCCTGCTGATTCTGCCAAGGCCTTTCCCTTGGCTGTGGTTTCGCTGGA 68571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635023790848