Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1386 141 7e-29 seq1453 95.1 1e-14 seq8888 82.4 6e-11 >seq1386 Length=4420875 Score = 141 bits (156), Expect = 7e-29 Identities = 291/428 (68%), Gaps = 6/428 (1%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || || |||| || | || || || || | || || ||||| || | ||| Sbjct 838163 GAACCACTTCTGAAAGAAAACACCCGCCGCTTTGTCATCTTTCCTATCGAATACCATGAT 838104 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| ||||| || || || || |||||||| ||||| | || ||||| || | Sbjct 838103 ATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGACCTT 838044 Query 61147 TCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAAC 61204 ||||| ||||| | ||||||| | | | | | || || | |||||||| | Sbjct 838043 TCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAGGAGAG--ATATTTCATTTTGC 837986 Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC-GT 61263 |||| |||| |||||||| || || || || || ||||| || || | | | || Sbjct 837985 ATGTTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTTTAGCAGT 837926 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || || || || || || | |||| || |||||||||| ||||||| ||||||||| Sbjct 837925 TTAGC-CAAGAAGTTCAGATTACGGAAGCCTGTTGTTTCTATGGCTTCCTAATTGCCATG 837867 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || || |||| || || ||||| ||| | ||||| || || ||||| | || Sbjct 837866 GAAAACATCCATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGATTCCAAA 837807 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 ||| | ||| | ||||| || || ||||| || || || ||| ||| || ||| Sbjct 837806 GAAAGGGAATTTCTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGAT 837747 Query 61444 TGGGCCTT 61451 |||||||| Sbjct 837746 TGGGCCTT 837739 >seq1453 Length=4135625 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| || ||| Sbjct 1827043 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAAAAT 1827102 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 1827103 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 1827149 >seq8888 Length=9016713 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 |||| || ||||||||||| |||||||| ||||||||||| || |||| || || |||| Sbjct 1704363 CGGAAGCCCGTTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATCCATTCTGAAATGT 1704304 Query 61346 ACAGTGTTCTCATCGATACGTACAT 61370 | ||| | ||||| || || ||||| Sbjct 1704303 ATAGTCTCCTCATTGACACTTACAT 1704279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397515786400640