Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq412768 134 2e-29 seq227835 102 1e-19 seq348283 84.2 3e-14 >seq412768 Length=38950 Score = 134 bits (148), Expect = 2e-29 Identities = 172/228 (75%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || ||||| |||| | | |||||| |||||| | Sbjct 38649 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTTC-TGACCCACACTTACTGGGAATT-C 38592 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 ||| | | | || ||| ||||| | ||||||||||| | || ||| | | || Sbjct 38591 CTCACTCATGGGGAATAATGGCAATCCCCCATCCCCATCACAAATGGGATTCAATGGGTT 38532 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAG--ACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||| ||||| | | || || ||| || || ||| || |||||||||||||| Sbjct 38531 ACCCGCACCTGCCAGAGTAG-TG-TAGGCACACGCTGAGCCAGTCGGTGTAGCGCGCGTG 38474 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 | |||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 38473 CAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 38427 >seq227835 Length=19624 Score = 102 bits (112), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCG 64 ||||||||||||| || ||| ||| | ||| ||||| || || ||| |||||||| | | Sbjct 16742 AAAGGGCAGGGACTTAATCACCGCAAACTT-ATGACCTGCACTCACTGGGAATTTCTT-G 16685 Query 65 TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATTACCC 123 || | | || ||||||||| |||||||||||| || || || | |||| Sbjct 16684 TTCATGGGCAGTAATTGCAATCCCGGGTCCCCATCACGAATGGTGTTCCATGGGTTACTG 16625 Query 124 GGACCTGTCGGCCAAGGTGATAG--ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 | |||| ||| | || ||| || | ||| | ||||||| | |||||| || Sbjct 16624 GAGCCTGCTGGCATA--TGGTAGGCACACACTGAGCCCGCCAGTGTATCTTGCGTGCAGC 16567 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || |||| |||||||||||||||||||||||||||| ||| || ||||| Sbjct 16566 CCCAAACAGCTAAGGGCATCACAGACCTGTTATTGCC-CAATCTCGGGTGGC 16516 >seq348283 Length=33069 Score = 84.2 bits (92), Expect = 3e-14 Identities = 82/103 (80%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||||| || |||||| |||| ||| Sbjct 32584 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGACCTGCACTTACTGGGAA-TTC 32527 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 ||||| | | || ||||||||| | ||||||||||||| Sbjct 32526 CTCGTCCATGGGGAATAATTGCAATCCCCGATCCCCATCACGA 32484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 748929780460