Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq385546 282 7e-74 seq379367 217 3e-54 seq234749 215 9e-54 seq352574 104 4e-20 >seq385546 Length=26871 Score = 282 bits (312), Expect = 7e-74 Identities = 238/291 (82%), Gaps = 5/291 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||| ||| | |||||||| ||| || ||||||||||||||||||||||||||| | Sbjct 25976 TACTGAGCAGGATTACCAT---GGCAACA--CATCAGTAGGGTAAAACTAACCTGTCTTA 26030 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | |||||||||||||||| | |||||| |||||||||||||||||||||||| | Sbjct 26031 CAATAGTCTAAACCCAGCTCATGATCCCTACTAGTGGGTGAACAATCCAACGCTTGGTAA 26090 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||| Sbjct 26091 ATTCTGCTTCATAATGATAGGAAGAGCCAACATCAAAGGATCAAAAAGCAACATCGCTAT 26150 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||| |||||| |||||||||||||||||||||||||||||||||| |||||| || | Sbjct 26151 GAACACTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTT 26210 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 ||| | | || | ||||||| |||| |||||| ||| ||||| Sbjct 26211 AAAACCCCAAAGGTCAGAAGGATCCTGAGGCTCTGCTTTCACGGTCTGTAT 26261 >seq379367 Length=4404 Score = 217 bits (240), Expect = 3e-54 Identities = 162/190 (85%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3779 ATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAA 3838 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3839 AAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 3898 Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284 ||| |||||| || | ||| | | || | |||||||| ||||| | | |||| || Sbjct 3899 CTGACACCTCCTGCTTAAAACCCCAAAGGTCGGAAGGATCGTGAGGCCCCGCCTTCACGG 3958 Query 285 TTTGTATTCA 294 | |||||||| Sbjct 3959 TCTGTATTCA 3968 >seq234749 Length=16923 Score = 215 bits (238), Expect = 9e-54 Identities = 208/266 (78%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||| ||||| |||||||||| ||||| || ||||||||||||||||| Sbjct 5743 TCATCAGTAGGGTGAAACTCACCTGTCTCACGACGGAGAAATCCCAGCTCACGTTCCCTG 5684 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| |||| |||| |||||| | ||||||||||||| | Sbjct 5683 TTAGTGGGTGAACAATCCAATGCTTGGTAAATTGTGCTTCACAACGATAGGAAGAGCCAA 5624 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT--TAT 208 | | ||||| ||||||| | |||||||||| |||| || ||||| | |||| ||| Sbjct 5623 CGGCAAAGGACGGAAAAGCAGCATCGCTATGAATGCTTTGCCACCACAGGTCAGTTATAT 5564 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268 ||| |||||||||||||| |||||| | | ||| | | || | ||||||| | Sbjct 5563 ACCTCTGGTAACTTTTCTGACACCTCCTACTTAAAACTCAAAAGGTCAGGAGGATCGTGA 5504 Query 269 GGCCACACTTTCATGGTTTGTATTCA 294 |||| |||||||| || |||||||| Sbjct 5503 GGCCCCACTTTCACAGTCTGTATTCA 5478 >seq352574 Length=40040 Score = 104 bits (114), Expect = 4e-20 Identities = 130/173 (75%), Gaps = 8/173 (5%) Strand=Plus/Plus Query 56 TCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115 ||||| || || || | |||| |||| || ||||| | ||||||||||||||| || Sbjct 4990 TCTCACGATGGCCTGATCCCACTTCACACTCT-TATTATTAGGTGAACAATCCAACACTG 5048 Query 116 ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA-ACGT 174 | |||||||| || || ||||||| || ||| ||||| |||||||| | || Sbjct 5049 GGTAAGGTCTGCTTC---ATAAT--GAAGAGCTGATATCTAAGGACTAAAAAGCAGAAGT 5103 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 ||||||||| |||||| |||| ||||||||| |||||||||||||||| Sbjct 5104 -GCTATGAACACTTGGCCAACACATTGCAGTTATCCTTGTGGTAACTTTTCTG 5155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 850799182464