Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq385546 282 7e-74
seq379367 217 3e-54
seq234749 215 9e-54
seq352574 104 4e-20
>seq385546
Length=26871
Score = 282 bits (312), Expect = 7e-74
Identities = 238/291 (82%), Gaps = 5/291 (2%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||| ||| | |||||||| ||| || ||||||||||||||||||||||||||| |
Sbjct 25976 TACTGAGCAGGATTACCAT---GGCAACA--CATCAGTAGGGTAAAACTAACCTGTCTTA 26030
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
| |||||||||||||||| | |||||| |||||||||||||||||||||||| |
Sbjct 26031 CAATAGTCTAAACCCAGCTCATGATCCCTACTAGTGGGTGAACAATCCAACGCTTGGTAA 26090
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 26091 ATTCTGCTTCATAATGATAGGAAGAGCCAACATCAAAGGATCAAAAAGCAACATCGCTAT 26150
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
|||| |||||| |||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 26151 GAACACTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTT 26210
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291
||| | | || | ||||||| |||| |||||| ||| |||||
Sbjct 26211 AAAACCCCAAAGGTCAGAAGGATCCTGAGGCTCTGCTTTCACGGTCTGTAT 26261
>seq379367
Length=4404
Score = 217 bits (240), Expect = 3e-54
Identities = 162/190 (85%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3779 ATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAA 3838
Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3839 AAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 3898
Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284
||| |||||| || | ||| | | || | |||||||| ||||| | | |||| ||
Sbjct 3899 CTGACACCTCCTGCTTAAAACCCCAAAGGTCGGAAGGATCGTGAGGCCCCGCCTTCACGG 3958
Query 285 TTTGTATTCA 294
| ||||||||
Sbjct 3959 TCTGTATTCA 3968
>seq234749
Length=16923
Score = 215 bits (238), Expect = 9e-54
Identities = 208/266 (78%), Gaps = 2/266 (1%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||||||| ||||| |||||||||| ||||| || |||||||||||||||||
Sbjct 5743 TCATCAGTAGGGTGAAACTCACCTGTCTCACGACGGAGAAATCCCAGCTCACGTTCCCTG 5684
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||||||||||| |||| |||| |||||| | ||||||||||||| |
Sbjct 5683 TTAGTGGGTGAACAATCCAATGCTTGGTAAATTGTGCTTCACAACGATAGGAAGAGCCAA 5624
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT--TAT 208
| | ||||| ||||||| | |||||||||| |||| || ||||| | |||| |||
Sbjct 5623 CGGCAAAGGACGGAAAAGCAGCATCGCTATGAATGCTTTGCCACCACAGGTCAGTTATAT 5564
Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268
||| |||||||||||||| |||||| | | ||| | | || | ||||||| |
Sbjct 5563 ACCTCTGGTAACTTTTCTGACACCTCCTACTTAAAACTCAAAAGGTCAGGAGGATCGTGA 5504
Query 269 GGCCACACTTTCATGGTTTGTATTCA 294
|||| |||||||| || ||||||||
Sbjct 5503 GGCCCCACTTTCACAGTCTGTATTCA 5478
>seq352574
Length=40040
Score = 104 bits (114), Expect = 4e-20
Identities = 130/173 (75%), Gaps = 8/173 (5%)
Strand=Plus/Plus
Query 56 TCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115
||||| || || || | |||| |||| || ||||| | ||||||||||||||| ||
Sbjct 4990 TCTCACGATGGCCTGATCCCACTTCACACTCT-TATTATTAGGTGAACAATCCAACACTG 5048
Query 116 ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA-ACGT 174
| |||||||| || || ||||||| || ||| ||||| |||||||| | ||
Sbjct 5049 GGTAAGGTCTGCTTC---ATAAT--GAAGAGCTGATATCTAAGGACTAAAAAGCAGAAGT 5103
Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227
||||||||| |||||| |||| ||||||||| ||||||||||||||||
Sbjct 5104 -GCTATGAACACTTGGCCAACACATTGCAGTTATCCTTGTGGTAACTTTTCTG 5155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 850799182464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |