Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq412768 147 4e-33 seq227835 102 2e-19 seq348283 95.1 2e-17 seq121883 77.0 6e-12 seq349252 73.4 7e-11 >seq412768 Length=38950 Score = 147 bits (162), Expect = 4e-33 Identities = 194/266 (73%), Gaps = 11/266 (4%) Strand=Plus/Plus Query 68 CCGGCTTCTTAGAGGGACTATCGGC--TCA---AGCCGATGGAAGTTTGAGGCAATAACA 122 || ||||||||||||||| | || ||| | |||| | ||||| |||||||| Sbjct 38389 CCAGCTTCTTAGAGGGACGAGTGGTGTTCAGTTACCCGA-----GATTGAG-CAATAACA 38442 Query 123 GGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGA 182 |||||||||||||||||||||| | |||| ||||||||||||||| ||| | || || Sbjct 38443 GGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACCGACTGGCTCAGCGT 38502 Query 183 GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242 || | | || | || |||| |||||| | | || | | | ||| ||||||| Sbjct 38503 GTGCCTACACTACTCTGGCAGGTGCGGGTAACCCATTGAATCCCATTTGTGATGGGGATG 38562 Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 | | ||||| |||||| | | | | ||||||| || |||||| | | |||| ||| | Sbjct 38563 GGGGATTGCCATTATTCCCCATGAGTGAGGAATTCCCAGTAAGTGTGGGTCAGAAGCTTG 38622 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||| |||||||||||||||| Sbjct 38623 CATTGATTAAGTCCCTGCCCTTTGTA 38648 >seq227835 Length=19624 Score = 102 bits (112), Expect = 2e-19 Identities = 180/256 (70%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||| |||| | ||| | |||| || | ||| |||||||||||||||||| Sbjct 16490 CTTCTTAGAAGGACAAATGGCATTCAGCCACCCGA-GATTG-GGCAATAACAGGTCTGTG 16547 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||| |||| |||| |||||| | ||||||| | | || | || | | Sbjct 16548 ATGCCCTTAGCTGTTTGGGGCTGCACGCAAGATACACTGGCGGGCTCAGTGTGTGCCTAC 16607 Query 191 CCTTGGCCGGAAGG-TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 | | ||| | ||| || | | | || | || | ||||| |||||| | ||| Sbjct 16608 CATATGCCAGCAGGCTCCAGTAACCCATGGAACAC-CATTCGTGATGGGGACCCGGGATT 16666 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||| ||| | | ||| || ||| || ||| || || ||||| || ||| |||| Sbjct 16667 GCAATTACTGCCCATGAACAAGAAATTCCCAGTGAGTGCAGGTCATAAGTTTGCGGTGAT 16726 Query 310 TACGTCCCTGCCCTTT 325 || ||||||||||||| Sbjct 16727 TAAGTCCCTGCCCTTT 16742 >seq348283 Length=33069 Score = 95.1 bits (104), Expect = 2e-17 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | | |||||||||||| | | | ||||||||| || |||||| || Sbjct 32484 TCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGGACGAGGAATTCCCAGTAAGTGC 32543 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||| | |||||||| |||||||||||||||| Sbjct 32544 AGGTCATAAGCTTGTGTTGATTAAGTCCCTGCCCTTTGTA 32583 >seq121883 Length=9577 Score = 77.0 bits (84), Expect = 6e-12 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1126 CTTCTTAGAGGGACAAGTGGCCTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1069 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 || |||||||||| | ||| ||||| |||||||||||| Sbjct 1068 ATTACCTTAGATGTCCACGGCTACACGCACGCTACACTGAC 1028 >seq349252 Length=30673 Score = 73.4 bits (80), Expect = 7e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 ||||||||||||||||||||||| | |||| ||| ||||||||||||||| Sbjct 2095 AGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCATGCGCGCTACACTGAC 2046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943208082432