Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq412768 253 6e-65 seq358558 221 4e-55 seq377934 125 2e-26 seq380296 122 3e-25 seq362390 122 3e-25 seq247318 122 3e-25 seq343619 120 9e-25 seq397149 111 5e-22 seq408800 109 2e-21 seq200428 107 6e-21 seq369580 102 2e-19 seq393859 95.1 4e-17 seq375792 93.3 1e-16 seq110274 93.3 1e-16 seq393176 91.5 4e-16 seq384834 91.5 4e-16 seq74808 91.5 4e-16 seq45451 89.7 2e-15 seq398070 77.0 1e-11 >seq412768 Length=38950 Score = 253 bits (280), Expect = 6e-65 Identities = 395/560 (71%), Gaps = 75/560 (13%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| |||| ||||| | ||| ||||||| Sbjct 37563 ACTCATTCCAATTACAGGGCCTCGAAAGAGTTCTGTGATGTTATTTTTCGTCCCTACCTC 37504 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || || || ||| ||||||| ||||||||||||||||||||||||||| || Sbjct 37503 CCTGTATCAGGAGTGGGTAA--------CCTGCTGCCTTCCTTGGATGTGGTAGC---TT 37455 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||| ||||||||||||| |||||| || |||||| | |||||| ||| Sbjct 37454 CTCAGGCTCCCTCTCTGGAATCGAACCCTGATTCCCTGTCACCCGTGGTCACCATGATAG 37395 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || ||| |||| ||||||||||||||||| |||||||| || || || Sbjct 37394 GCATGGCAACTATCATCAAAAGTTGATAGGGCAGACGTTTGAATGGGTTGTCACC--ATC 37337 Query 242 AA---GGCCATGC--GATT--CGTTAAGTTATTATGAATCACCAAGG-----AG------ 283 || || | ||| |||| | | ||||| || ||||||| | || Sbjct 37336 AAGGGGGGCGTGCAAGATTAGCCAGAGGTTATCTAGAGTCACCAAAGCCGCCAGGGCCCA 37277 Query 284 CCCCGAAG----------------------GGCGTTGGTTTTTTATCTAATAAATACAC- 320 |||||||| || ||||| |||| |||| |||||| ||| Sbjct 37276 CCCCGAAGCTGGGGCCGGAGGGAGGCTGACGGGGTTGG-TTTTGATCTGATAAATGCACG 37218 Query 321 --CCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 ||| || | ||||| | |||||| |||||||||||||||||||| | Sbjct 37217 CATCCTCCCACAAAGGGGGTCAGCACCCATCAGCATGCATTAGCTCTAGAATTACCACAG 37158 Query 372 TTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426 ||||||| |||| | || | | | |||| ||| |||||||||||||| ||||||| Sbjct 37157 TTATCCAAGTAGGAGAGGAGCGAGCAACCAAAGGAACCATAACTGATTTAATAAGCCATT 37098 Query 427 CGCAGTTTCACTGTATAG--ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC 484 ||||||||||||||| | ||| |||||||||||||||||||| | ||||| ||| Sbjct 37097 CGCAGTTTCACTGTACTGGCCATGC--GTACTTAGACATGCATGGCTTCACCTTTGTGAC 37040 Query 485 AAGCATATGACTACTGGCAG 504 || |||| ||||||||||| Sbjct 37039 AAACATA-AACTACTGGCAG 37021 >seq358558 Length=59512 Score = 221 bits (244), Expect = 4e-55 Identities = 380/545 (70%), Gaps = 70/545 (13%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAA-AGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||| |||||||| | | | |||| || |||| ||||| | ||| ||||| Sbjct 4707 TACTCATTTCAATTACAGGGTCTTGATAGAGTCCAGTATTGTTATTTTTCATCATTACCT 4648 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | | || |||| |||||||| || | |||| |||||||||||||||||||||||| || Sbjct 4647 ACTCAGGTTGGGAGTGGGTAATATGTGTGCCTACTGCCTTCCTTGGATGTGGTAGCCATT 4588 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||| ||||| ||||||| ||| | | | || ||| | |||| |||| Sbjct 4587 TCTCAGGCTCCCTCTCTGGAATTGAACCCTGATT-CTCTTCACACGTGGTCACCACGGTA 4529 Query 181 GGCCACT-ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || |||| | |||||||| ||||||||||||||||| | |||| | | || | Sbjct 4528 GG-CACTGAGACTACCATCAAAAGTTGATAGGGCAGATGATCAAATG---GGTTGTCGCC 4473 Query 240 TCAA----GGCCATGCGATT--CGTTAAGTTATTATGAATCACCAAGG-----AGC---- 284 |||| || || | |||| | | ||||| || ||||||| | ||| Sbjct 4472 TCAATGGGGGGCAGGTGATTGGCCCAAGGTTATCTAGAGTCACCAAAGCTGCCAGCACCT 4413 Query 285 --------------CCCGAAGGG----------CGTTGGTTTTTTATCTAATAAATACA- 319 ||| |||| ||||| |||| |||| |||||| || Sbjct 4412 GCTCCCTGGCTGGGGCCGGAGGGAGGCTGACCAGGTTGG-TTTTGATCTGATAAATGCAA 4354 Query 320 -----CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACC 367 ||| | |||| ||||| | | ||||||||||||||||||||||||| Sbjct 4353 GCATCACCCCTGCGAA--AGGGGTCAGAACCTGTCAGCATGTATTAGCTCTAGAATTACC 4296 Query 368 ACGGTTATCCATGTAGTA-AGGTAC----TATCAAATAAACGATAACTGATTTAATGAGC 422 || |||||||| |||| | ||| | | |||| ||| |||||||| ||||||||| Sbjct 4295 ACAGTTATCCAAGTAGGAGAGGAGCAAGTGACCAAAGGAACCATAACTGAATTAATGAGC 4236 Query 423 CATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 || | ||| ||||||||| | | ||| |||||||||||||||||||||| |||||| Sbjct 4235 CACTTACAGATTCACTGTACTGGGGTGC--GTACTTAGACATGCATGGCTTAACCTTTGA 4178 Query 482 GACAA 486 ||||| Sbjct 4177 GACAA 4173 >seq377934 Length=14831 Score = 125 bits (138), Expect = 2e-26 Identities = 97/112 (87%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTA 452 |||| ||| ||||||||||||||||||||| | ||||||||||||| | ||| | Sbjct 2068 CAAAGGAACCATAACTGATTTAATGAGCCATCCACAGTTTCACTGTACTGGCCATGC--A 2011 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 2010 TACTTAGACATGCACGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1960 >seq380296 Length=31661 Score = 122 bits (134), Expect = 3e-25 Identities = 131/166 (79%), Gaps = 12/166 (7%) Strand=Plus/Plus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AG----GTACTATCAAAT 399 ||||||||||||||||||||||||| |||||| | |||| | || | || |||| Sbjct 12303 CATGTATTAGCTCTAGAATTACCACAGTTATCTAAGTAGGAGAGGAGTGAACGGCCAAAG 12362 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG-TATAGAT-TGCTTATACTT 457 ||| |||| |||||| |||||||||||| |||||||| | || | ||| |||||| Sbjct 12363 GAACCATAAGTGATTTCATGAGCCATTCGGAGTTTCACCGCCCCAGCTGTGC--ATACTT 12420 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||| |||||| || |||| | |||||||||||| ||||||||| Sbjct 12421 AGACACGCATGGATTCATCTCT--GACAAGCATATG-CTACTGGCA 12463 >seq362390 Length=81759 Score = 122 bits (134), Expect = 3e-25 Identities = 117/147 (80%), Gaps = 10/147 (7%) Strand=Plus/Minus Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT-----ATCAAATAAACGATA 407 ||||||||||| ||| ||||||||| |||| | | | | | |||| |||| ||| Sbjct 18162 AGCTCTAGAATCACC--GGTTATCCAAGTAGGAGAGGAGTGAGTGACCAAAGAAACCATA 18105 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCA 466 |||||||||||||||||||| |||||||||||| || ||| |||||||||||||| Sbjct 18104 ACTGATTTAATGAGCCATTCATAGTTTCACTGTACCAGCCTGC--GTACTTAGACATGCA 18047 Query 467 TGGCTTAATCTTTGAGACAAGCATATG 493 | | |||||||| ||||||||||||| Sbjct 18046 TAGTTTAATCTTCCAGACAAGCATATG 18020 >seq247318 Length=1447 Score = 122 bits (134), Expect = 3e-25 Identities = 97/112 (87%), Gaps = 5/112 (4%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTA 452 |||| ||| ||||||||||||||||||||| |||||||||||||| || ||| | Sbjct 1049 CAAAGGAACCATAACTGATTTAATGAGCCATCTGCAGTTTCACTGTACCAGCCATGC--A 1106 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 1107 CACTTAGACATGCATGGCTTAATCTTTGAGACAAGTATAT-ACTACTGGCAG 1157 >seq343619 Length=11166 Score = 120 bits (132), Expect = 9e-25 Identities = 97/113 (86%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTA 452 |||| ||| ||||||||||||||||| || | ||||||||||||| | | ||| | Sbjct 9470 CAAAGGAACCATAACTGATTTAATGAGGTATCCACAGTTTCACTGTACTGGTCATGC--A 9413 Query 453 TACTTAGACATGCATGG-CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 9412 TACTTAGACATGCATGGCCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 9361 >seq397149 Length=25478 Score = 111 bits (122), Expect = 5e-22 Identities = 94/111 (85%), Gaps = 5/111 (5%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAG-ATTGCTTA 452 |||| ||| |||||||||||||||||||||| ||||||||||||| || ||| | Sbjct 10950 CAAAGGAACCGTAACTGATTTAATGAGCCATTCACAGTTTCACTGTACCAGCCATGC--A 10893 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||| | |||||| |||||||||||||||||||| || ||||||||| Sbjct 10892 TACTTAGATAGGCATGGTTTAATCTTTGAGACAAGCATGTG-CTACTGGCA 10843 >seq408800 Length=19820 Score = 109 bits (120), Expect = 2e-21 Identities = 91/110 (83%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||||||||||| | ||||||||||||| | ||| Sbjct 15995 CAAAGGAACCATAACTGATTTAATGAGCCATCCACAGTTTCACTGTACTGGCCATGAATA 15936 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| ||||||||||||||| ||||||||||||||| |||| |||| Sbjct 15935 CTTAGACGTGCATGGCTTAATCTCTGAGACAAGCATATG-GTACTAGCAG 15887 >seq200428 Length=7827 Score = 107 bits (118), Expect = 6e-21 Identities = 120/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACCC--AAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||| |||||||||| | |||||| ||||||| || || ||||||||||||| Sbjct 3418 CTCATTTCAATTACAAGGTCTCTAAAAGAATCCTGTATTGTTACTTTTTGTCACTACCTC 3477 Query 62 CCCG-TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | | ||| |||||||||||| | || ||| |||||||||||||||| | || || Sbjct 3478 CCTTCTATGAGGAGTGGGTAATTTGCCCACCGGCT-CCTTCCTTGGATGTGGCATCCATT 3536 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCC 157 |||||| ||| ||| || | |||||| |||||| Sbjct 3537 TCTCAGTTCTCCTTTCCCCAAACAAACCCTGATTCCC 3573 >seq369580 Length=29918 Score = 102 bits (112), Expect = 2e-19 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 |||||||||||| |||| |||||||| |||||| | | ||||||||||||||||| Sbjct 26192 CTGATTTAATGAACCATCCGCAGTTTTACTGTACTGGCGGTGCATACTTAGACATGCATG 26251 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||| ||||||||||||| |||||||||| Sbjct 26252 GCCTAATCTTCCAGACAAGCATATG-CTACTGGCAG 26286 >seq393859 Length=17104 Score = 95.1 bits (104), Expect = 4e-17 Identities = 124/175 (71%), Gaps = 25/175 (14%) Strand=Plus/Minus Query 54 ACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGT 113 ||||| ||||| || |||| |||||||||||| ||||||||| |||||||| Sbjct 8724 ACTACTTCCCCAGGTTGGGAGTGGGTAATTTGCATGCCTGCTGCTTTCCTTGG------- 8672 Query 114 AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATAC 173 ||||||||| ||| || |||||| || |||| | | || | | || Sbjct 8671 --------------CTCCCTCTCTGGATTCAAACCCTGATCCCCCATCATCCATGGTCAC 8626 Query 174 CATGGT--AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 || || |||| ||| |||||||| ||||||||||||||||| ||||||||| Sbjct 8625 CACTGTCCAGGCAGCTA--CTACCATCAAAAGTTGATAGGGCAGACATTTGAATG 8573 >seq375792 Length=15550 Score = 93.3 bits (102), Expect = 1e-16 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | | ||| || ||||| | ||||| ||||||||||||| Sbjct 9368 ACTCATTCCAATTACAGGGCATTGAAAAAGTCCTGTCTTGTTATTTTTTGTCACTACCTC 9309 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 || || ||| |||||||||||||| |||| |||| ||||| |||||| |||| Sbjct 9308 CCTAGGTGAGGAGTGGGTAATTTGCGCACCTGTTGCCATCCTT-GATGTGATAGC 9255 >seq110274 Length=2170 Score = 93.3 bits (102), Expect = 1e-16 Identities = 73/89 (82%), Gaps = 9/89 (10%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||||||||||||||| |||||||||||||| | |||||||||| | Sbjct 1989 ATAACTGATTTAATGAGCCATCTGCAGTTTCACTGTACA---------TACTTAGACAGG 1939 Query 465 CATGGCTTAATCTTTGAGACAAGCATATG 493 | | ||||| ||||||||||||||||||| Sbjct 1938 CGTAGCTTAGTCTTTGAGACAAGCATATG 1910 >seq393176 Length=7361 Score = 91.5 bits (100), Expect = 4e-16 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 ||||||||||||||| |||| |||||||| |||| | | | |||||| |||||| Sbjct 937 TAACTGATTTAATGAACCATCTGCAGTTTCCCTGTGCCGGGCG-TGCTACTTAAACATGC 995 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||||||||||||||||||||||||| || | ||||| Sbjct 996 ACGGCTTAATCTTTGAGACAAGCATATG-CTGCAGGCAG 1033 >seq384834 Length=28583 Score = 91.5 bits (100), Expect = 4e-16 Identities = 79/97 (81%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 |||||| ||||||||||| |||||| | | || | | |||||||||||||||| Sbjct 26830 ACTGATGTAATGAGCCATCTACAGTTTTATTATACTGGTCATGAATACTTAGACATGCAT 26889 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||| ||||||||||||| |||||||||| Sbjct 26890 GGCTTAATCTTCCAGACAAGCATATG-CTACTGGCAG 26925 >seq74808 Length=462 Score = 91.5 bits (100), Expect = 4e-16 Identities = 76/88 (86%), Gaps = 5/88 (6%) Strand=Plus/Plus Query 419 GAGCCATTCGCAGTTTCACTGTAT-AG-ATTGCTTATACTTAGACATGCATGGCTTAATC 476 ||||||| ||| |||||| |||| || | ||| ||||||||||||||||||||||||| Sbjct 1 GAGCCATCCGCTGTTTCAGTGTACCAGCAGTGC--ATACTTAGACATGCATGGCTTAATC 58 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||| | |||||||||| Sbjct 59 TTTGAGACAGGCATACG-CTACTGGCAG 85 >seq45451 Length=4721 Score = 89.7 bits (98), Expect = 2e-15 Identities = 102/139 (73%), Gaps = 10/139 (7%) Strand=Plus/Plus Query 55 CTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT------ 108 |||||| || | ||| | | || |||||||| | || || ||||||||||||| Sbjct 1668 CTACCTTCCTGGGTCAGAAATGAGTAATTTGTGAGCATGTTGCCTTCCTTGGAACCTCAA 1727 Query 109 ----GTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164 ||||||||| ||||||||||||||||| | | || || || ||||| || ||| Sbjct 1728 AACAGTGGTAGCCATTTCTCAGGCTCCCTCTTTGAATTCAAATGCTGATTCCTTGTCACC 1787 Query 165 CGTTGATACCATGGTAGGC 183 ||| | |||||||||||| Sbjct 1788 CGTGGTCACCATGGTAGGC 1806 >seq398070 Length=7179 Score = 77.0 bits (84), Expect = 1e-11 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 ||||||||||||||||||||||||||||| | | |||||||||||||||||||| Sbjct 5838 TTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTT 5779 Query 473 AATCT 477 ||||| Sbjct 5778 AATCT 5774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1504034509824