Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq366024 228 6e-55 seq404197 185 7e-42 seq327453 107 2e-18 seq400361 95.1 1e-14 seq418289 82.4 6e-11 >seq366024 Length=42324 Score = 228 bits (252), Expect = 6e-55 Identities = 610/915 (67%), Gaps = 23/915 (3%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || || |||| || | || || || || | || || ||| | || | ||| Sbjct 17440 GAACCACTTCTGAAAGAAAACACCCGCCGCTTTGTCATCTTTCCTATCAAATACCATGAT 17499 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| ||||| || || || || |||||||| ||||| | || ||||| || | Sbjct 17500 ATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGACCTT 17559 Query 61147 TCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAAC 61204 ||||| ||||| | ||||||| | | | | | || || | |||||||| | Sbjct 17560 TCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAGGAGAG--ATATTTCATTTCGC 17617 Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC-GT 61263 || | |||| |||||||| || || || || || ||||| || || |||| | || Sbjct 17618 ATATTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCAGT 17677 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || || || || || || | |||| || ||||||||||| ||||||| ||||||||| Sbjct 17678 TTAGC-CAAGAAGTTCAGATTACGGAAGCCCGTTGTTTCTATGGCTTCCTAATTGCCATG 17736 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || || |||| || || ||||| ||| | ||||| || || ||||| | || Sbjct 17737 GAAAACATCCATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGATTCCAAA 17796 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 ||| | ||| | ||||| || || ||||| || || || ||| ||| || ||| Sbjct 17797 GAAAGGGAATTTCTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGAT 17856 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCAT 61501 |||||||| ||||| | | |||| |||||| | ||| ||||| || | || | Sbjct 17857 TGGGCCTTGTGCTGGAT--CGGGGACAAAGAGGCTACGTATGGAGAACGTTTCGTAGCCT 17914 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | || || || | || || ||| || ||||| | || || ||| | || | Sbjct 17915 TTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAAA 17974 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGC 61620 |||| || || || ||||| || || || ||||| | || || || | |||||||| Sbjct 17975 AACGAGGTCTGATACCCGGCCTCACATTTTCCAATGAACTTATTAGCA-GAGACGAGGGT 18033 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 | || ||||| ||||| || ||||||||| | ||| | | || |||||| Sbjct 18034 TTACACTGTGACTTTGCCTGCCTGATATTCAAAC---ACCTGCTACACAAACCTTCGGAG 18090 Query 61681 GAGCGTGTGGGTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTGACTGA 61739 || | || | | | |||| | || || | || |||||||| || || || || Sbjct 18091 CAGAGAGTCAAATA-AATAATCGTCAATGCAGTTAGAATAGAACAGGAGTTCCTCACGGA 18149 Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799 || |||| || ||||| || |||||||| | ||| |||||| || ||||| Sbjct 18150 TGCCCTGCCAGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATCGAATT 18209 Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAA 61856 || || ||| | || || || ||||| | ||| || | | | | || |||| Sbjct 18210 CGTGGCAGACAGACTTATGCGGGAGCTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAAAA 18266 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 |||||||| || ||||| | ||||| ||||| || ||||| || || | ||||| | Sbjct 18267 TCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTCTGAGAAGAG 18326 Query 61917 TGTAGGCGACTATCA 61931 |||||||| ||||| Sbjct 18327 AGTAGGCGAGTATCA 18341 >seq404197 Length=65104 Score = 185 bits (204), Expect = 7e-42 Identities = 566/858 (66%), Gaps = 23/858 (3%) Strand=Plus/Plus Query 61084 GATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGAT 61143 |||||||||| |||| || || || || |||||||||||||||| |||||||| || Sbjct 52220 GATATTTGGCAGATGTGTAAGAACGCTGAGGCTTCCTTCTGGACGGCTGAGGAGGTGGAC 52279 Query 61144 TTGTCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTA 61201 | ||||| ||||| | || |||| | | | | | || || | |||||| | Sbjct 52280 CTTTCCAAGGACATTCAGCACCGGGAAGCCCTGAAGCCTGAGGAGAG--ATATTTCACTT 52337 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 ||||| || | |||| ||| || ||||| | || ||||| || | |||| | Sbjct 52338 CGCATGTCCTGCCTTTCTCTGCAGCAAGTGACGGCGTAGTAAATGAAAACCTGGTGGAGC 52397 Query 61262 GT-TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | || || || || || || | |||| || | || |||||| |||||||| || ||| Sbjct 52398 GGCTTAGC-CAAGAAGTTCAGATTACGGAAGCCCATTATTTCTATGGCTTCCAAATCGCC 52456 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 ||||| || | || ||||| ||||| ||| | ||||| || || ||||| || Sbjct 52457 ATGGAAAACATACATTCGGAAATGTATAGTCTCCTCATTGACACTTACATTCAAGATTCC 52516 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 ||| | ||| | ||||| ||||| ||||| || || || ||| ||| || Sbjct 52517 AAAGAAAGGGAATTTCTCTTCAACGCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGCA 52576 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGG 61498 ||||||||||| ||||| | || |||| ||||| | | | || | | | Sbjct 52577 GATTGGGCCTTGCGCTGGAT--CGAGGACAAAGAGGCTAGGTACTGAAAGCGTGTCGTAG 52634 Query 61499 CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGA 61558 | ||||| | || || || | || || ||| || ||||| | || || ||| | | Sbjct 52635 CCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCA 52694 Query 61559 AGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAG 61617 ||||| | ||||| |||||||| || || || ||||| | || || || | |||||| Sbjct 52695 AGAAATGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCA-GAGACGAG 52753 Query 61618 GGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG 61677 || | || ||||| ||||| | || | ||||||| | ||| | | || ||| Sbjct 52754 GGTTTACACTGTGACTTTGCCTTCCTGATGTTCAAAC---ACCTGCTACACAAACCTTCG 52810 Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTGAC 61736 ||| || | || || ||| |||| | || || | || |||||||| || || || Sbjct 52811 GAGCAGAGAGTCAAAGAAATT-ATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCAC 52869 Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796 || || | | || ||||| || |||||||| | | ||| |||||| || | Sbjct 52870 GGAGGCCCCGACAGTGAAGCTCATTGGGATGAATTGCGCTTTGATGAAGCAGTACATCAA 52929 Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAA 61853 ||| | || ||| | || || | || ||||| | ||| || | | | | || | Sbjct 52930 ATTCCTGGCAGACAGACTTATGCTGGAGCTGGGT-TTTAGCAAGGTTTTCAGAGTA--GA 52986 Query 61854 AAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||| |||||||| || ||||| | | ||| ||||| || ||||| || || || ||||| Sbjct 52987 AAATCCATTTGACTTTATGGAGAATAGTTCACTGGAAGGGAAGACTAACTTCTTTGAGAA 53046 Query 61914 ACGTGTAGGCGACTATCA 61931 | |||||||| ||||| Sbjct 53047 GAGAGTAGGCGAGTATCA 53064 >seq327453 Length=26950 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| || || || | ||||| || Sbjct 25158 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCTAGGTTCTGCTG 25217 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 25218 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 25277 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 25278 AGACTCAATGATGGCATACCAAAG 25301 >seq400361 Length=55729 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| || ||| Sbjct 42012 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAAAAT 41953 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 41952 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 41906 >seq418289 Length=29330 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 |||| || ||||||||||| |||||||| ||||||||||| || |||| || || |||| Sbjct 24705 CGGAAGCCCGTTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATCCATTCTGAAATGT 24764 Query 61346 ACAGTGTTCTCATCGATACGTACAT 61370 | ||| | ||||| || || ||||| Sbjct 24765 ATAGTCTCCTCATTGACACTTACAT 24789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395525952100160