Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bison_20bison_20bison_20[refseq_20GCF_5F000754665.1_202014-10-08] 128,431 sequences; 2,828,031,685 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq123442 116 3e-21 seq123636 86.0 5e-12 >seq123442 Length=2042734 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||| || Sbjct 178233 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTG 178292 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| ||||| || || ||||| || Sbjct 178293 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTACCTGTCTCTGTCTG 178352 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 178353 AGACTCAATGATGGCATACCAAAG 178376 >seq123636 Length=25235462 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||| || || || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 19807011 CAGGAAGTACAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 19807070 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || || ||||| || Sbjct 19807071 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTATATCAGAGA 19807117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396945705569840