Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq27 163 4e-38 seq3 154 2e-35 seq4 123 4e-26 seq11 120 5e-25 seq7 78.8 1e-12 >seq27 Length=48749331 Score = 163 bits (180), Expect = 4e-38 Identities = 173/223 (78%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 7419624 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 7419567 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 7419566 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 7419507 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| ||||||||| |||||||| Sbjct 7419506 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGTGCGCGTGCA 7419447 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||| | |||||||||||||||||||||||||||||| ||||| Sbjct 7419446 GCCTCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 7419405 >seq3 Length=127865068 Score = 154 bits (170), Expect = 2e-35 Identities = 177/233 (76%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||||||| || ||||| | ||||| ||||| ||| |||||| |||||| || Sbjct 11657428 TACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGACCCGCACTTACTGGGAATT-CC 11657485 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120 ||||| | | || ||||| ||| | ||||||||||||| | ||||| | ||| Sbjct 11657486 TCGTTCATGGGGAATAATTGTAATCCCCGATCCCCATCACGAATGAGGTTCAACGGGTTA 11657545 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || | |||| ||| ||| | | || ||| |||||||||||||||||| | Sbjct 11657546 CCGGCGCCTGCTGGCGTAGGGTAGGCCCACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAG 11657605 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 11657606 CCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 11657657 >seq4 Length=124429915 Score = 123 bits (136), Expect = 4e-26 Identities = 174/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||| | || |||||| |||||| | Sbjct 112575907 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGGCCCGTACTTACTGGGAATT-C 112575850 Query 61 CTCGTTGA-AGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGAT 118 ||| || | ||| || ||||||||| |||||||| | || ||||| || | Sbjct 112575849 CTCTTTCATAGAG-AATAATTGCAATCCCAGATCCCCATTATGAATGGGGTTCAACAGGT 112575791 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| | |||| ||| ||| | || |||||| ||||||||| || ||| Sbjct 112575790 TACCTGTGCCTGCAGGCGTAGGGTAGGCACACGTTGAGCCAGTCAGTGTAGGATGCATGC 112575731 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| | || ||||| Sbjct 112575730 AGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATC-TCAGTGGC 112575678 >seq11 Length=110256634 Score = 120 bits (132), Expect = 5e-25 Identities = 171/234 (73%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || ||||| ||||| ||| |||||| |||||| | Sbjct 99450325 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 99450382 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || || | | || || |||||| ||||| ||||| | ||||| | || Sbjct 99450383 ATCATTCATGGGGAATAACTGCAATCCCTGATCCC-ATCACTAACGGGGTTCAACGGGTT 99450441 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||| | || ||| | || || ||| |||||||||||||||||| Sbjct 99450442 ACCCACGCCTGCCAGCATAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 99450501 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | || ||||||||| ||||||||||| ||||| ||||| ||| ||||| Sbjct 99450502 GCCCCGGACGTCTAAGGGCGTCACAGACCTGGTATTG-CTCAATCTTGGGTGGC 99450554 >seq7 Length=111948857 Score = 78.8 bits (86), Expect = 1e-12 Identities = 62/73 (85%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| | |||| |||| |||||||||||||||||||||||||||||| ||| Sbjct 66460869 TCAGTGTAGCACATGTGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 66460927 Query 221 AAACTTCCGTGGC 233 || ||| ||||| Sbjct 66460928 AATCTTGGGTGGC 66460940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999766880