Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq29 143 1e-31 seq28 120 1e-24 seq19 111 7e-22 seq20 80.6 1e-12 seq17 75.2 5e-11 seq2 75.2 5e-11 >seq29 Length=52131593 Score = 143 bits (158), Expect = 1e-31 Identities = 103/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||||| Sbjct 51895737 TGTTAGGACCCGAAGGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 51895796 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||||||| || |||||| ||| ||||||||||| ||||| | |||||||||||||| Sbjct 51895797 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCG 51895855 >seq28 Length=46105673 Score = 120 bits (132), Expect = 1e-24 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||| |||||||||||||||||||||| |||| ||||||| ||||| ||||||| Sbjct 29042396 TTAGGACTSGAAAGATGGTGAACTATGCCTGGRYAGGGCGAAGCCACAGGAAGCTCTGGT 29042455 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| | |||||| ||| | ||||||||| || || | ||||||||||||||| Sbjct 29042456 GGAGGTCTGTAGCGGTCCTGACATGCAAATCGGTCATCCGACCTGGGTATAGGGGCGA 29042513 >seq19 Length=65317831 Score = 111 bits (122), Expect = 7e-22 Identities = 98/121 (81%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| |||| |||||||||||||||| | ||||||||||| ||||||||| Sbjct 29654422 TGTTAGGACCCAAAAGGTGGTGAACTATGCCTGGACGGGGTGAAGCCATAGGAAACTCCA 29654363 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA-GGGGCG 682 | ||||| | |||||| ||| | ||||||| | ||||| || |||||||| |||||| Sbjct 29654362 GCGGAGGTCCATAGCGGTCCTGACATGCAAATTGGTCGTCCAACCTGGGTATATGGGGCG 29654303 Query 683 A 683 | Sbjct 29654302 A 29654302 >seq20 Length=75862604 Score = 80.6 bits (88), Expect = 1e-12 Identities = 89/118 (75%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 534 TCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGC 593 ||||||||| || | | ||||| | ||| ||||| ||||||||||||||||| | Sbjct 8292564 TCTTCGGATTTTCCTGTGCATGAGCACACACGTTAGGACCMGAAAGATGGTGAACTATTC 8292505 Query 594 CTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGC 651 || |||| ||||| ||||||||||||||||||| || || ||| ||| |||| Sbjct 8292504 -TGGGCAGGGCAAAGCCGGAGGAAACTCTGGTGGAGGTCCGTAGTGGTCCTGATGTGC 8292448 >seq17 Length=76519027 Score = 75.2 bits (82), Expect = 5e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||||||||| |||||||||||| | || |||| ||||||||||||||||| ||| Sbjct 11406113 TGGGACCCGAAATATGGTGAACTATCCTTGGGCAGGGAGAAGCCAGAGGAAACTCCAGTG 11406172 Query 627 GAGG 630 |||| Sbjct 11406173 GAGG 11406176 >seq2 Length=140680885 Score = 75.2 bits (82), Expect = 5e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||| | |||| ||||||| |||||||| ||| |||||||||||||||||||| ||||| Sbjct 111119675 GACTCAAAAGTTGGTGAATTATGCCTGGGCAGGATGAAGCCAGAGGAAACTCTGATGGAG 111119616 Query 630 GCTCGCAGCGGTTCTG 645 | || ||| || ||| Sbjct 111119615 GTTCATAGCAGTCCTG 111119600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999313600