Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq27 232 1e-58 seq3 170 3e-40 seq11 140 5e-31 seq6 131 3e-28 seq7 122 1e-25 seq16 118 2e-24 seq2 111 3e-22 seq15 80.6 4e-13 seq4 77.0 5e-12 >seq27 Length=48749331 Score = 232 bits (256), Expect = 1e-58 Identities = 205/251 (82%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| |||||||| ||| | ||||||||||||||||||||||||||||||| | Sbjct 7419466 GTCAGTGTAGTGCGCGTGCAGCCTCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 7419408 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| | | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 7419407 CAATCA-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 7419349 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 7419348 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 7419289 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 7419288 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 7419229 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 7419228 ATCAATCTGTC 7419218 >seq3 Length=127865068 Score = 170 bits (188), Expect = 3e-40 Identities = 165/207 (80%), Gaps = 9/207 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 11657585 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 11657643 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACC-AT 130 ||| | || |||||| | |||| | ||||||||||||| | | | || ||| | Sbjct 11657644 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGAGGGACGCCGACCGCT 11657702 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 11657703 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 11657762 Query 188 AAATCACTCCACCAACTAAGAACGGCC 214 |||| |||||||||||||||| |||| Sbjct 11657763 AAATTGCTCCACCAACTAAGAAAGGCC 11657789 Score = 107 bits (118), Expect = 3e-21 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 ||||||||||| | ||| |||||||||||||||| ||||| | ||||| ||||| ||| Sbjct 51194441 GGAATTAACCAAATGAATTGCTCCACCAACTAAGAATGGCCAGGTACCACTACCCACAGA 51194382 Query 234 ATCAAGAAAGAGCTATCAATCTGT 257 |||||||||||||||||||||||| Sbjct 51194381 ATCAAGAAAGAGCTATCAATCTGT 51194358 >seq11 Length=110256634 Score = 140 bits (154), Expect = 5e-31 Identities = 97/110 (88%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| ||| ||||| ||||||||||||||||||||| |||| Sbjct 103117561 CTAGTTAGCATGCCAGAGTCTCCTTCATTATCAGAATTAACCAGACAAATCACTTTACCA 103117502 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 |||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 103117501 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCA 103117452 Score = 91.5 bits (100), Expect = 2e-16 Identities = 80/97 (82%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | || ||||||||| ||||||||||| ||||| || Sbjct 99450482 GTCAGTGTAGCGCGCGTGCAGCCCCGGACGTCTAAGGGCGTCACAGACCTGGTATTG-CT 99450540 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111 ||| ||| |||||| | | || | |||||||||| Sbjct 99450541 CAATCTT-GGGTGGCTGAACGTCACTTGTCCCTCTAA 99450576 >seq6 Length=122646612 Score = 131 bits (144), Expect = 3e-28 Identities = 185/254 (73%), Gaps = 23/254 (9%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA--CCTGTTATTGCCT 74 ||||| || || ||| |||| |||||||||||||||||||| ||||||| ||| | Sbjct 72488786 CAGTGCAGTGCTTATGCAGCCCCAGACATCTAAGGGCATCACAGATGCCTGTTAGTGC-T 72488844 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA 131 || || | ||||| | |||| | |||| ||||||||| | || |||| | Sbjct 72488845 CAGTCTCAGAC-GGCTGAATGCCATTTGTCCTTCTAAGAAGTTGGGGGACAYCAAC--TG 72488901 Query 132 GTCGATGGGG-------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || | |||| ||| |||||| | | |||| ||||||||| |||||||||| Sbjct 72488902 CTC-AGGGGGTGCCTAACTAGTTAGCATGCCAGAGTCTTTTTCGTTATCAGAATTAACCA 72488960 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 ||||||| ||||||| |||||| |||||||||||||| || | |||| ||||||| Sbjct 72488961 GACAAATTGCTCCACC----AAGAACAGCCATGCACCACCATCCMTGGAATGGAGAAAGA 72489016 Query 245 GCTATCAATCTGTC 258 || |||||||||| Sbjct 72489017 GC--TCAATCTGTC 72489028 >seq7 Length=111948857 Score = 122 bits (134), Expect = 1e-25 Identities = 178/250 (71%), Gaps = 23/250 (9%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | |||| |||| |||||||||||||||||||||||||||||| || Sbjct 66460868 GTCAGTGTAGCACATGTGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CT 66460926 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-CCAGCCACCAACCATAGT 133 ||| ||| |||||| | |||| | |||||||||||||| | | | || Sbjct 66460927 CAATCTT-GGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGAATGCTGACAGC 66460985 Query 134 CGATGGG-------GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 || ||| ||| |||||| | | ||||| || |||||| ||||||||| || Sbjct 66460986 TGAGGGGTTGCATAACTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCTGA 66461045 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||||||||| | ||||||||| ||||||||| |||| || | || Sbjct 66461046 CAAATCACTCC-----------ATGGCCATGCAACACCACCCACGGAATYGAGGA--GGC 66461092 Query 247 TATCAATCTG 256 |||||||||| Sbjct 66461093 TATCAATCTG 66461102 >seq16 Length=77906047 Score = 118 bits (130), Expect = 2e-24 Identities = 83/95 (87%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | | ||||||| |||| ||||||||||||||||||||||||| || Sbjct 56817654 CTAGTTAGCATGCCAGAGACTCGTTCATTATTGGAATTAACCAGACAAATCACTCCATCA 56817595 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||||||||||||||| ||||| Sbjct 56817594 ACTAAGAACGGCCATGCACCACCACCCACGGAATC 56817560 Score = 87.8 bits (96), Expect = 3e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||| || ||||||||||||||| |||||||||||||||||||| || || |||||| || Sbjct 6284525 AAAGCATTCCACCAACTAAGAATGGCCATGCACCACCACCCATGGACTCGAGAAAGGACT 6284584 Query 248 ATCAATCTGTC 258 |||||| |||| Sbjct 6284585 ATCAATTTGTC 6284595 Score = 87.8 bits (96), Expect = 3e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||| ||||||||||||||||||| ||| ||||||||||||||| || |||| |||| || Sbjct 7574576 AAAGCACTCCACCAACTAAGAACAGCCCTGCACCACCACCCATGGACTCAAAAAAGCACT 7574635 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 7574636 GTCAATCTGTC 7574646 Score = 84.2 bits (92), Expect = 3e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||| || ||||||||||||||| ||||||||||||||||||| || || |||||| || Sbjct 6204140 AAAGCATTCCACCAACTAAGAATGGCCATGCACCACCACCCACGGACTCGAGAAAGGACT 6204081 Query 248 ATCAATCTGTC 258 |||||| |||| Sbjct 6204080 ATCAATTTGTC 6204070 >seq2 Length=140680885 Score = 111 bits (122), Expect = 3e-22 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 ||||||||||| | | ||||| || |||||| ||||||||||||||| | ||||||| Sbjct 61906186 GCTATTTAGCATGCCAGTGTCTCATTTGTTATCAGAATTAACCAGACAATTG-CTCCACC 61906128 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| |||| ||||||||||||| |||| |||||||| || ||||||||| Sbjct 61906127 TTCTAAGAACT-CCATACACCACCACCCATGGAATTGAGAAAGAGTTAGCAATCTGTC 61906071 >seq15 Length=84800079 Score = 80.6 bits (88), Expect = 4e-13 Identities = 74/93 (80%), Gaps = 8/93 (9%) Strand=Plus/Plus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 || ||||| |||||||||||| |||| ||||| |||| ||||||||||||||| Sbjct 26645594 TCCTTATCAGAATTAACCAGAAAAATTGCTCCA-------AGAA-GGCCATGCACCACCA 26645645 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||| |||||||||| ||| || ||| Sbjct 26645646 CCCACGGAATCCAGAAAGAGCTGTCAGTCAGTC 26645678 >seq4 Length=124429915 Score = 77.0 bits (84), Expect = 5e-12 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| || ||| |||| | |||||||||||||||||||||||||||||| || Sbjct 112575749 GTCAGTGTAGGATGCATGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 112575691 Query 75 CAAACTTCCATTGGCT 90 ||| || || ||||| Sbjct 112575690 CAATCT--CAGTGGCT 112575677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799752992