Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq27 185 2e-44 seq3 179 7e-43 seq11 149 1e-33 seq4 141 2e-31 seq7 87.8 3e-15 >seq27 Length=48749331 Score = 185 bits (204), Expect = 2e-44 Identities = 198/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | ||||| |||||||||||||||| Sbjct 7419368 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGT-GATTGAG-CAATAACAGGTCTGTG 7419425 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||| |||||||| |||||||||| | || || || | | Sbjct 7419426 ATGCCCTTAGATGTCCGAGGCTGCACGCGCACTACACTGACTGGCTCAGCGTGTGCCTAC 7419485 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 7419486 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 7419545 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 7419546 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 7419605 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 7419606 AAGTCCCTGCCCTTTGTA 7419623 >seq3 Length=127865068 Score = 179 bits (198), Expect = 7e-43 Identities = 197/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 11657683 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 11657626 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || | | | Sbjct 11657625 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGGGCCTAC 11657566 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||| | ||| ||||| | | || ||| ||||| ||||||| | | ||| Sbjct 11657565 CCTACGCCAGCAGGCGCCGGTAACCCGTTGAACCTCATTCGTGATGGGGATCGGGGATTA 11657506 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| | ||||||| Sbjct 11657505 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGTGTTGATT 11657446 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 11657445 AAGTCCCTGCCCTTTGTA 11657428 >seq11 Length=110256634 Score = 149 bits (164), Expect = 1e-33 Identities = 171/225 (76%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||| ||||| ||||| ||||||||||| ||||||||| || | |||| |||||||||||| Sbjct 99450547 AAGATTGAG-CAATACCAGGTCTGTGACGCCCTTAGACGTCCGGGGCTGCACGCGCGCTA 99450489 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 ||||||| | || || || | | ||| || || ||| ||||||| | ||| ||| Sbjct 99450488 CACTGACTGGCTCAGCGTGTGCCTACCCTATGCTGGCAGGCGTGGGTAA-CCCGTTGAAC 99450430 Query 225 TCTG-TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 | | | ||| | ||||| | |||||| ||||| | | | || || |||| || |||| Sbjct 99450429 CCCGTTAGTGAT-GGGATCAGGGATTGCAGTTATTCCCCATGAATGATGAATTCCCAGTA 99450371 Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| ||||| ||| || ||||||| |||||||||||||||| Sbjct 99450370 AGTGCGGGTCATAAGCTTGCATTGATTAAGTCCCTGCCCTTTGTA 99450326 >seq4 Length=124429915 Score = 141 bits (156), Expect = 2e-31 Identities = 168/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||| || |||| Sbjct 112575685 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGCTGCATGCATCCTAC 112575743 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | ||||| || | | ||| ||| | ||| ||||| || | || | Sbjct 112575744 ACTGACTGGCTCAACGTGTGCCTACCCTACGCCTGCAGGCACAGGTAACCTGTTGAACCC 112575803 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCT-TCAACGAGGAATGCCTAGTAA 284 | || | ||||||| | |||||||||||| |||| | || ||||||| || ||||| Sbjct 112575804 CATTCATAATGGGGATCTGGGATTGCAATTATT-CTCTATGAAAGAGGAATTCCCAGTAA 112575862 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | || | ||| ||| | |||||||| |||||||||||||||| Sbjct 112575863 GTACGGGCCATAAGCTTGTGTTGATTAAGTCCCTGCCCTTTGTA 112575906 >seq7 Length=111948857 Score = 87.8 bits (96), Expect = 3e-15 Identities = 126/172 (73%), Gaps = 5/172 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| |||||||||||||||| Sbjct 66460966 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 66460909 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| |||| |||| | ||||||||||| | || | || | Sbjct 66460908 ATGCCCTTAGATGTCTGGGGCTGCACATGTGCTACACTGACTGGCTCAGCATGTGYCTAC 66460849 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT-GTCGTGCTGGGGAT 241 ||| ||| | ||| ||||||| || ||| ||| || | | | ||||||| Sbjct 66460848 CCTATGCCAGCAGGCGTGGGTAA-CTAGTTGAACACTCTTTGCGATGGGGAT 66460798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199696896