Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq21 104 4e-20 seq18 104 4e-20 seq8 82.4 1e-13 seq10 75.2 2e-11 >seq21 Length=69307409 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 52042733 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 52042676 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 52042675 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 52042622 >seq18 Length=65948792 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 59932119 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 59932176 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 59932177 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 59932230 >seq8 Length=116941312 Score = 82.4 bits (90), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 |||| ||||||| | |||||| | ||| | | || | || |||| || || || | Sbjct 37867554 GAGARGAACCGCAGG-TTCAGAC-ATTTGATGTATGTGCTTGGCTGAGGAGCCAATGGGG 37867497 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 ||||||||||||||| |||||||| ||||| |||||||| ||||||||| |||| Sbjct 37867496 CGAAGCTACCATCTGTGGGATTATGACTGAAAGCCTCTAAATCAGAATCC-TGCC 37867443 >seq10 Length=106310653 Score = 75.2 bits (82), Expect = 2e-11 Identities = 83/108 (77%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 7 GAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCG 66 ||||||| |||| |||||| | ||||| | || | || |||| || || || | Sbjct 77979030 GAGGAACTGCGGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGTCAATGGGTCA 77978973 Query 67 AAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||||||| |||||||| ||||| ||||| |||||||||||| Sbjct 77978972 AAGCTACCATCTGTGGGATTATGACTGAATGCCTCCAAGTCAGAATCC 77978925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199746048