Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11 201 3e-49 seq9 118 3e-24 seq2 116 1e-23 seq21 105 2e-20 seq1 104 7e-20 seq5 102 2e-19 seq3 102 2e-19 seq29 100 9e-19 seq23 96.9 1e-17 seq17 93.3 1e-16 seq10 86.0 2e-14 seq13 80.6 8e-13 seq7 80.6 8e-13 >seq11 Length=110256634 Score = 201 bits (222), Expect = 3e-49 Identities = 179/221 (81%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 8 TTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66 || |||||||| | | | |||||| ||||||| ||||| | |||||||||||||| | Sbjct 41933442 TTSCAATTACAGGCTCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCCT 41933501 Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 || ||| |||||||||||| | |||||||||||||| ||||||||||||| |||||||| Sbjct 41933502 GTTGGGTGTGGGTAATTTGCACACCTGCTGCCTTCCTCGGATGTGGTAGCCATTTCTCAG 41933561 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC-CA 185 |||||||||| ||||||||||||| ||| ||| | |||| | | |||| | ||||| || Sbjct 41933562 GCTCCCTCTCYGGAATCGAACCCTGATTMCCCATCACCCATGGTCACCAAGATAGGCACA 41933621 Query 186 CT-ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 | || ||||||| ||||||||| ||||| ||| |||| Sbjct 41933622 GTGAT--TACCATCCCAAGTTGATAAAGCAGACATTCGAAT 41933660 >seq9 Length=108100205 Score = 118 bits (130), Expect = 3e-24 Identities = 89/104 (86%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 34 CTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTG 93 |||||| ||||| |||| ||| |||||| | ||| ||| |||||||||||| ||||| Sbjct 28563220 CTGTAT---TATTTTTTGTTACTTCCTCCCTGGGTCAGGAGTGGGTAATTTGCCTGCCTG 28563276 Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 |||||||||||| | ||||||||| ||||||||||||||||||| Sbjct 28563277 CTGCCTTCCTTGAAGGTGGTAGCCATTTCTCAGGCTCCCTCTCC 28563320 >seq2 Length=140680885 Score = 116 bits (128), Expect = 1e-23 Identities = 121/153 (79%), Gaps = 10/153 (7%) Strand=Plus/Minus Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGT-ACT-ATCAAATAAACGATAACTGAT 413 |||||||||||| |||||||| |||| | || | | | |||| ||| ||||||||| Sbjct 65025578 TCTAGAATTACCR--GTTATCCAAGTAGAAGAGTGAGTGACCAAAGGAACCATAACTGAT 65025521 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT--ACTTAGACATGCATGGCT 471 ||||| ||| || | ||||||||||||| || ||| |||||||||||||| | | Sbjct 65025520 TTAATAAGCAATCCACAGTTTCACTGTACCA---GCCTATGCACTTAGACATGCATAGTT 65025464 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||| || || ||||||| Sbjct 65025463 TAATCTTTGAGACAAGCATGTG-CTGCTGGCAG 65025432 >seq21 Length=69307409 Score = 105 bits (116), Expect = 2e-20 Identities = 63/66 (95%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51665938 TGGGTAATTTGTGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 51665879 Query 135 TCCGGA 140 ||| || Sbjct 51665878 TCCAGA 51665873 Score = 102 bits (112), Expect = 2e-19 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 51665642 TGGGTAATTTGTGTGCCTGCTGCCTTCCTGGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 51665583 Query 135 TCCGGA 140 ||| || Sbjct 51665582 TCCAGA 51665577 >seq1 Length=161108492 Score = 104 bits (114), Expect = 7e-20 Identities = 83/100 (83%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||||||||||||| ||| |||||||| |||| | | | ||||||||||| Sbjct 45894378 ATAACTGATTTAATGAGCYRTTCACAGTTTCARTGTACTGGCCGTGTGTACTTAGACATT 45894319 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||||||||| |||||| || Sbjct 45894318 CATAGCTTAATCTTTGAGACAAGCATATG-TTACTGGTAG 45894280 Score = 87.8 bits (96), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 9/106 (8%) Strand=Plus/Plus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTATACTTA 458 ||| |||||||||||||||||| || |||||||| |||| | ||| | ||||| Sbjct 144557356 AACCATAACTGATTTAATGAGCTATCTGCAGTTTCGTTGTACTGGCCATGC--ACACTTA 144557413 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| | ||||||||| Sbjct 144557414 ----TGCATGGCTTAATCTTTGAGACAAGCATAT-ATTACTGGCAG 144557454 >seq5 Length=125642736 Score = 102 bits (112), Expect = 2e-19 Identities = 93/114 (82%), Gaps = 5/114 (4%) Strand=Plus/Plus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCT 450 |||||| | | |||||||||||||||||| ||| |||||||||||| | || ||| Sbjct 37459142 ATCAAAGGAGCCATAACTGATTTAATGAGCTATTTGCAGTTTCACTGCACAGTCCATGC- 37459200 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||| ||| |||||| ||||||||||||||||| ||| |||||| Sbjct 37459201 -GTACTTAGATATGGATGACTTAATATTTGAGACAAGCATATG-CTATTGGCAG 37459252 >seq3 Length=127865068 Score = 102 bits (112), Expect = 2e-19 Identities = 83/100 (83%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||||| ||||||| ||| || ||||||||||| | | | ||| || |||| Sbjct 16280606 ATAACTGATTCAATGAGCTATTAGCTGTTTCACTGTACTGGCAGTGTGTACCTACACATA 16280547 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||||||||||||||||||| |||||||||| Sbjct 16280546 CMTGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 16280508 >seq29 Length=52131593 Score = 100 bits (110), Expect = 9e-19 Identities = 89/110 (81%), Gaps = 5/110 (5%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| |||||||||||||||||| || |||||||||||||| | | | ||| Sbjct 37722539 CAAAGAAAGCATAACTGATTTAATGAGCTGTTTGCAGTTTCACTGTACTGGTCACACATA 37722480 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||||||||||||| | ||||||||| Sbjct 37722479 CTT----TTGCATGGCTTAATCTTTGAGACAAGCATACG-TTACTGGCAG 37722435 Score = 100 bits (110), Expect = 9e-19 Identities = 89/110 (81%), Gaps = 5/110 (5%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| |||||||||||||||||| || |||||||||||||| | | | ||| Sbjct 37763048 CAAAGAAAGCATAACTGATTTAATGAGCTGTTTGCAGTTTCACTGTACTGGTCACACATA 37762989 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||||||||||||| | ||||||||| Sbjct 37762988 CTT----TTGCATGGCTTAATCTTTGAGACAAGCATACG-TTACTGGCAG 37762944 Score = 75.2 bits (82), Expect = 3e-11 Identities = 83/110 (75%), Gaps = 5/110 (5%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| |||||||||||||||||| || ||||||||| ||| | || | Sbjct 20523165 CAAAGGAACCATAACTGATTTAATGAGCTATCTGCAGTTTCATTGT----ACTGGCCAYG 20523220 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | || |||| |||||||||||||||||| |||||| ||||||||| Sbjct 20523221 CACAGTTGTGCACAGCTTAATCTTTGAGACAACCATATG-TTACTGGCAG 20523269 >seq23 Length=53331160 Score = 96.9 bits (106), Expect = 1e-17 Identities = 81/97 (84%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 ||||| || ||||||| ||| |||||||||||||| | ||| | | ||||||||||| Sbjct 22764084 AACTGCTTGAATGAGCTATTTGCAGTTTCACTGTACTGGTTGTGTGTT-TTAGACATGCA 22764026 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||| ||| ||||||||| |||||||| Sbjct 22764025 TGGCTTAATCTTTCAGATAAGCATATG-TTACTGGCA 22763990 >seq17 Length=76519027 Score = 93.3 bits (102), Expect = 1e-16 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||| ||||| |||| | |||||||||||||||||| || | ||||| ||||||| Sbjct 37934140 ATAGCTGATCCGATGATCTATTCGCAGTTTCACTGTACTGACCGTGCATACTCAGACATG 37934199 Query 465 CATGGCTTAATCTTTGAGACAAGCATATG 493 ||||||||||||||||||||||||| ||| Sbjct 37934200 CATGGCTTAATCTTTGAGACAAGCACATG 37934228 Score = 87.8 bits (96), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 10/143 (7%) Strand=Plus/Plus Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||| ||||||||||| |||||| |||| || ||||||||||||||| || || ||||| Sbjct 46430908 CCTGTTGCCTTCCTTGAATGTGGGAGCCATTAATCAGGCTCCCTCTCCTGACTCAAACCC 46430967 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGT-TGAT 208 | ||||||| | || | ||| |||| | | |||||||| ||||| |||| Sbjct 46430968 TGATTCCCCATCAC----TCATAAGTAGGTATGAGA----ACTACCATC-AAAGTCTGAT 46431018 Query 209 AGGGCAGAAATTTGAATGAACCA 231 |||| | ||||||||||| || Sbjct 46431019 TAGGCAAACATTTGAATGAATCA 46431041 >seq10 Length=106310653 Score = 86.0 bits (94), Expect = 2e-14 Identities = 81/100 (81%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA--TTGCTTATACTTAGACA 462 ||| ||||| |||||||| || | |||||||||||||| | |||| |||| |||||| Sbjct 63637156 ATAGCTGATATAATGAGCTATCCACAGTTTCACTGTATTGGCCTTGC--ATACCTAGACA 63637099 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 | || |||||| ||| |||||||||||||| ||||||| Sbjct 63637098 TACACGGCTTATGCTTGGAGACAAGCATATG-TTACTGGC 63637060 Score = 78.8 bits (86), Expect = 3e-12 Identities = 78/100 (78%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||| |||||| | ||| || | |||||||||||||| | | | | | |||||| Sbjct 63621703 ATAATTGATTTCAGTAGCTATCCACAGTTTCACTGTATTGGCTATGGGTGCCTGGACATG 63621644 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| |||| |||||||||||||| ||||||||| Sbjct 63621643 CATGGCTTACTCTTGGAGACAAGCATATG-TTACTGGCAG 63621605 >seq13 Length=84433108 Score = 80.6 bits (88), Expect = 8e-13 Identities = 86/113 (76%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||| ||||| |||| | || |||||| ||| | | ||||| |||||||||||| Sbjct 12699955 TCAATCCAACTACAGGCCCTTCAAAGAGTCCTATRTTGTTATTTTCCATCACTACCTCCC 12699896 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 | ||| ||| ||| |||||| | | | ||||| ||||||||||||||||||| Sbjct 12699895 CTGGTCAGGAGTGGTTAATTTACACTCTTGCTGTCTTCCTTGGATGTGGTAGC 12699843 >seq7 Length=111948857 Score = 80.6 bits (88), Expect = 8e-13 Identities = 78/100 (78%), Gaps = 6/100 (6%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||| ||| ||| ||||| || || |||||| |||||| || | | ||| ||| Sbjct 101136662 ATAAGTGACTTARTGAGCTATCTGCGGTTTCATTGTATAAGCTGTTCACACT-----ATG 101136716 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| | | |||||| Sbjct 101136717 CATGGCTTAATCTTTGAGACAAGCATATG-CGATTGGCAG 101136755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399516672