Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1927 174 2e-41 seq1012 145 1e-32 seq1696 123 4e-26 seq626 116 6e-24 seq94 78.8 1e-12 >seq1927 Length=224990 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 222721 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 222778 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 222779 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 222838 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 222839 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 222898 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 222899 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 222951 >seq1012 Length=341837 Score = 145 bits (160), Expect = 1e-32 Identities = 175/233 (75%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||||||| || ||||| | ||||| ||||| ||| |||||| |||||| || Sbjct 248085 TACAAAGGGCAGGGACTTAATCAACTCAAGCTT-ATGACCCGCACTTACTGGGAATT-CC 248028 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120 ||||| | | || ||||| ||| | ||||||||||||| | ||||| | ||| Sbjct 248027 TCGTTCATGGGGAATAATTGTAATCCCCGATCCCCATCACGAATGAGGTTCAACGGGTTA 247968 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || | |||| ||| ||| | | | ||| ||||||||||||| |||| | Sbjct 247967 CCGGCGCCTGCTGGCATAGGGTAGGCCCACCCTGAGCCAGTCAGTGTAGCGCGTGTGCAG 247908 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 247907 CCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 247856 >seq1696 Length=1266530 Score = 123 bits (136), Expect = 4e-26 Identities = 174/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||| | || |||||| |||||| | Sbjct 316400 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGGCCCGTACTTACTGGGAATT-C 316457 Query 61 CTCGTTGA-AGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGAT 118 ||| || | ||| || ||||||||| |||||||| | || ||||| || | Sbjct 316458 CTCATTCATAGAG-AATAATTGCAATCCCAGATCCCCATTATGAATGGGGTTCAACAGGT 316516 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| | |||| ||| ||| | || |||||| ||||||||| || ||| Sbjct 316517 TACCTGTGCCTGCAGGCGTAGGGTAGGCACACGTTGAGCCAGTCAGTGTAGGATGCATGC 316576 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| | || ||||| Sbjct 316577 AGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATC-TCAGTGGC 316629 >seq626 Length=3061481 Score = 116 bits (128), Expect = 6e-24 Identities = 170/234 (73%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || ||||| ||||| ||| |||||| |||||| | Sbjct 1183485 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 1183428 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || || | | || || |||||| ||||| ||||| | ||||| | || Sbjct 1183427 ATCATTCATGGGGAATAACTGCAATCCCTGATCCC-ATCACTAACGGGGTTCAACGGGTT 1183369 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||| | || ||| | || || ||| ||||||||| |||||||| Sbjct 1183368 ACCCACGCCTGCCAGCATAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGTGCGCGTGCA 1183309 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | || ||||||||| ||||||||||| ||||| ||||| ||| ||||| Sbjct 1183308 GCCCCGGACGTCTAAGGGCGTCACAGACCTGGTATTG-CTCAATCTTGGGTGGC 1183256 >seq94 Length=693165 Score = 78.8 bits (86), Expect = 1e-12 Identities = 62/73 (85%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| | |||| |||| |||||||||||||||||||||||||||||| ||| Sbjct 211651 TCAGTGTAGCACATGTGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 211593 Query 221 AAACTTCCGTGGC 233 || ||| ||||| Sbjct 211592 AATCTTGGGTGGC 211580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751699916280