Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq827 143 1e-31 seq1559 123 1e-25 seq3288 114 5e-23 seq2640 102 3e-19 seq1788 98.7 4e-18 seq4286 78.8 4e-12 seq265 78.8 4e-12 seq312 75.2 5e-11 >seq827 Length=140081 Score = 143 bits (158), Expect = 1e-31 Identities = 112/134 (84%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| ||||||||| || ||||||||||||||| |||| |||| Sbjct 66840 GAGCATGAGCACACATGTTAGGACCCGAAGGACGGTGAACTATGCCTGGGCAGGGCGAAG 66899 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 66900 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACC 66959 Query 669 TGGGTATAGGGGCG 682 |||||||||||||| Sbjct 66960 TGGGTATAGGGGCG 66973 >seq1559 Length=303283 Score = 123 bits (136), Expect = 1e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||| |||||||||||||||||||||| |||||| ||||||| ||||| ||||||| Sbjct 9980 TTAGGACTGGAAAGATGGTGAACTATGCCTGGATAGGGCGAAGCCACAGGAAGCTCTGGT 10039 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| | |||||| ||| | ||||||||| || || | ||||||||||||||| Sbjct 10040 GGAGGTCTGTAGCGGTCCTGACATGCAAATCGGTCATCCGACCTGGGTATAGGGGCGA 10097 >seq3288 Length=111447 Score = 114 bits (126), Expect = 5e-23 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||| ||| |||| |||||||||| |||||||| Sbjct 19972 TGTTAGGACCCGAAAGATGGTGAACTATGTCTGGGAAGGGCGAAGCCAGAGAAAACTCTG 20031 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||||||| | |||| | ||| |||||||||| | ||| | ||||||||||| Sbjct 20032 GTGGAGGACCTTAGCGATCCTGAGGTGCAAATCGGTTGTCCGACCTGGGTATAGGG 20087 Score = 109 bits (120), Expect = 2e-21 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 19028 GAGTTGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 19087 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||| ||||||| || | |||| ||||||| |||||| | Sbjct 19088 ACCGGCACAAGACCGATAGTCAACAAGTACCGTAAGAAAAAGTTGAAAAGAACTTTGAAG 19147 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 19148 AGAGAGTTCAAGAGGGCGTGAAA 19170 >seq2640 Length=659084 Score = 102 bits (112), Expect = 3e-19 Identities = 96/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| |||| || ||||||||||||| | ||||||||||| ||||||||| Sbjct 647218 TGTTAGGACCCAAAAGGTGATGAACTATGCCTGGACGGGGTGAAGCCATAGGAAACTCCA 647277 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA-GGGGCG 682 | ||||| | |||||| ||| | ||||||| | ||||| | |||||||| |||||| Sbjct 647278 GCGGAGGTCCATAGCGGTCCTGACATGCAAATTGGTCGTCCAGCCTGGGTATATGGGGCG 647337 Query 683 A 683 | Sbjct 647338 A 647338 >seq1788 Length=97661 Score = 98.7 bits (108), Expect = 4e-18 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||||||||||||||||||||| |||| |||||||| ||||||||| Sbjct 70701 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGAAGGGCAAAGCCAGAAGAAACTCTG 70760 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 ||||||| | ||| | ||| |||||||||| | ||| ||||||||| Sbjct 70761 GTGGAGGACCATAGCAATCCTGATGTGCAAATCGGTTGTCCGGCCTGGGTATAG 70814 >seq4286 Length=46615 Score = 78.8 bits (86), Expect = 4e-12 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || || || ||||||||||||||| |||||| |||| |||||||||||| ||||| | Sbjct 4572 TTAGGGCCTGAAAGATGGTGAACTCTGCCTGGGCAGGGCAAAGCCAGAGGAACCTCTGCT 4631 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||| | ||| || ||| ||| ||||| | ||| | ||| ||| ||||| Sbjct 4632 GGAGGTCTGTAGCAGTCCTGATGTGTAAATCAGTAGTCTGACCTGGCTATGGGGGC 4687 >seq265 Length=3179758 Score = 78.8 bits (86), Expect = 4e-12 Identities = 89/118 (75%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 534 TCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGC 593 ||||||||| || | | ||||| | ||| ||||| ||||||||||||||||| | Sbjct 65398 TCTTCGGATTTTCCTGTGCATGAGCACACACGTTAGGACCAGAAAGATGGTGAACTATTC 65339 Query 594 CTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGC 651 || |||| ||||| ||||||||||||||||||| || || ||| ||| |||| Sbjct 65338 -TGGGCAGGGCAAAGCCGGAGGAAACTCTGGTGGAGGTCCGTAGTGGTCCTGATGTGC 65282 >seq312 Length=3425337 Score = 75.2 bits (82), Expect = 5e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||| | |||| ||||||| |||||||| ||| |||||||||||||||||||| ||||| Sbjct 2312967 GACTCAAAAGTTGGTGAATTATGCCTGGGCAGGATGAAGCCAGAGGAAACTCTGATGGAG 2312908 Query 630 GCTCGCAGCGGTTCTG 645 | || ||| || ||| Sbjct 2312907 GTTCATAGCAGTCCTG 2312892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079116431600