Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq1788 156 2e-36 seq472 149 3e-34 seq3288 143 1e-32 seq2036 98.7 5e-19 >seq1788 Length=97661 Score = 156 bits (172), Expect = 2e-36 Identities = 94/99 (95%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 69534 GGAAAAGAAACTAACCAGGATTCCCTCAGTAAAGGCGAGTGAACAGGGAAGAGCCCAGCG 69593 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGC 99 | |||||||| ||| ||||||||| |||||||||||||| Sbjct 69594 CTGAATCCCCACCCTGCGGTGGGGTGCGGGACATGTGGC 69632 >seq472 Length=1712663 Score = 149 bits (164), Expect = 3e-34 Identities = 94/102 (92%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||| Sbjct 829760 GGAAAAGAAACTAACCAGGATTCCCTCAGTAAAGGCCAGTGAACAGGGAACAACCCAGCG 829819 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | ||||||| ||||||||||||||||||||||| ||||| || Sbjct 829820 CGGAATCCCTGCCCCGCGGTGGGGCGCGGGACACGTGGCTTA 829861 >seq3288 Length=111447 Score = 143 bits (158), Expect = 1e-32 Identities = 90/97 (93%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 |||| | ||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 18809 AAAAAAGACTAACCAGGATTTCCTCAGTAAAGGCGAGTGAACAGGGAAGAGCCCAGCGCT 18868 Query 63 GAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGC 99 ||||||| |||||||||||||| |||||||||||||| Sbjct 18869 GAATCCCTGCCCCGCGGTGGGGTGCGGGACATGTGGC 18905 >seq2036 Length=1548885 Score = 98.7 bits (108), Expect = 5e-19 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 || ||| ||||||||| |||||||||| ||| |||||||||||| | |||| ||| || Sbjct 5659 GGTAAAAAAACTAACCCAGATTCCCTCAATAAAGGCGAGTGAACATGTAAGAACCCTGCA 5600 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGC 99 | |||||||| |||| ||| |||| | ||||||||||| Sbjct 5599 CTGAATCCCCACCCCATGGTAGGGCACAGGACATGTGGC 5561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230311025280