Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1927 244 2e-62 seq1012 161 2e-37 seq7820 140 5e-31 seq94 136 6e-30 seq2621 129 9e-28 seq2747 123 4e-26 seq3028 120 5e-25 seq622 111 3e-22 seq626 87.8 3e-15 seq413 87.8 3e-15 seq1035 80.6 4e-13 seq2956 78.8 1e-12 seq1696 77.0 5e-12 >seq1927 Length=224990 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 222879 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 222937 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 222938 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 222996 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 222997 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 223056 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 223057 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 223116 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 223117 ATCAATCTGTC 223127 >seq1012 Length=341837 Score = 161 bits (178), Expect = 2e-37 Identities = 165/211 (78%), Gaps = 17/211 (8%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||| |||| |||| | |||||||||||||||||||||||||||||| || Sbjct 247928 GTCAGTGTAGCGCGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 247870 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACCATA 131 ||| | || |||||| | ||| | ||||||||||||| | | | ||||| | Sbjct 247869 CAATC-TCGGGTGGCTGAACACCACTTGTCCCTCTAAGAAGTTGGGGGACGCCAAC--TG 247813 Query 132 GTCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 ||| |||| ||| |||||| | | ||||||||||||||||||||||||| Sbjct 247812 CTCG--GGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACC 247755 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCC 214 |||||| || |||||||||||||||| |||| Sbjct 247754 AGACAAGTCGCTCCACCAACTAAGAAAGGCC 247724 >seq7820 Length=8329 Score = 140 bits (154), Expect = 5e-31 Identities = 97/110 (88%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| ||| ||||| ||||||||||||||||||||| |||| Sbjct 6610 CTAGTTAGCATGCCAGAGTCTCCTTCATTATCAGAATTAACCAGACAAATCACTTTACCA 6551 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 |||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 6550 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCA 6501 >seq94 Length=693165 Score = 136 bits (150), Expect = 6e-30 Identities = 180/249 (72%), Gaps = 22/249 (9%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | |||| |||| |||||||||||||||||||||||||||||| || Sbjct 211652 GTCAGTGTAGCACATGTGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CT 211594 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| ||| |||||| | |||| | |||||||||||||| | | | ||| Sbjct 211593 CAATCTT-GGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCTGACAGTT 211535 Query 135 GATGGG-------GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || ||| ||| |||||| | | ||||| || |||||| ||||||||| ||| Sbjct 211534 GAGGGGTTGCATAACTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCTGAC 211475 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||||||||| | ||||||||| ||||||||| ||||| || | ||| Sbjct 211474 AAATCACTCC-----------ATGGCCATGCAACACCACCCACGGAATCGAGGA--GGCT 211428 Query 248 ATCAATCTG 256 ||||||||| Sbjct 211427 ATCAATCTG 211419 >seq2621 Length=675070 Score = 129 bits (142), Expect = 9e-28 Identities = 86/96 (90%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| | | ||| |||||||||||||||||||||||||||| |||||||| Sbjct 531466 CTAGTTAGCAGGCCAGAGACTCATTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 531525 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 |||||||||||||||||||||||||||| |||||| Sbjct 531526 ACTAAGAACGGCCATGCACCACCACCCACGGAATCA 531561 >seq2747 Length=458949 Score = 123 bits (136), Expect = 4e-26 Identities = 184/254 (72%), Gaps = 23/254 (9%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA--CCTGTTATTGCCT 74 ||||| || || ||| |||| ||||| |||||||||||||| ||||||| || | Sbjct 104682 CAGTGCAGTGCTTATGCAGCCCCAGACATCCAAGGGCATCACAGATGCCTGTTAGCGC-T 104624 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA 131 || || | ||||| | |||| | |||| ||||||||| | ||||||| | Sbjct 104623 CAGTCTCAGAC-GGCTGAATGCCATTTGTCCTTCTAAGAAGTTGGGGGACACCAAC--TG 104567 Query 132 GTCGATGGGG-------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || | |||| ||| |||||| | | |||| ||| ||||| |||||||||| Sbjct 104566 CTC-AGGGGGTGCCTAACTAGTTAGCATGCCAGAGTCTTTTTCATTATCAGAATTAACCA 104508 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 ||||||| ||||||||| |||| |||||||||||||| |||| |||| ||||||| Sbjct 104507 GACAAATTGCTCCACCAA----GAACAGCCATGCACCACCATCCATGGAATGGAGAAAGA 104452 Query 245 GCTATCAATCTGTC 258 || |||||||||| Sbjct 104451 GC--TCAATCTGTC 104440 >seq3028 Length=1696059 Score = 120 bits (132), Expect = 5e-25 Identities = 77/84 (92%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 ||||||||||| |||||| |||||||||||||||| ||||| | ||||||||||| ||| Sbjct 1315349 GGAATTAACCAAACAAATTGCTCCACCAACTAAGAATGGCCAGGTACCACCACCCACAGA 1315408 Query 234 ATCAAGAAAGAGCTATCAATCTGT 257 |||||||||||||||||||||||| Sbjct 1315409 ATCAAGAAAGAGCTATCAATCTGT 1315432 >seq622 Length=2756337 Score = 111 bits (122), Expect = 3e-22 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 ||||||||||| | | ||||| || |||||| ||||||||||||||| | ||||||| Sbjct 2152860 GCTATTTAGCATGCCAGTGTCTCATTTGTTATCAGAATTAACCAGACAATTG-CTCCACC 2152802 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| |||| ||||||||||||| |||| |||||||| || ||||||||| Sbjct 2152801 TTCTAAGAACT-CCATACACCACCACCCATGGAATTGAGAAAGAGTTAGCAATCTGTC 2152745 >seq626 Length=3061481 Score = 87.8 bits (96), Expect = 3e-15 Identities = 79/97 (81%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| |||||||| |||| | || ||||||||| ||||||||||| ||||| || Sbjct 1183328 GTCAGTGTAGTGCGCGTGCAGCCCCGGACGTCTAAGGGCGTCACAGACCTGGTATTG-CT 1183270 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111 ||| ||| |||||| | | || | |||||||||| Sbjct 1183269 CAATCTT-GGGTGGCTGAACGTCACTTGTCCCTCTAA 1183234 >seq413 Length=1058336 Score = 87.8 bits (96), Expect = 3e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||| ||||||||||||||||||| ||| ||||||||||||||| || |||| |||| || Sbjct 761822 AAAGCACTCCACCAACTAAGAACAGCCCTGCACCACCACCCATGGACTCAAAAAAGCACT 761881 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 761882 GTCAATCTGTC 761892 >seq1035 Length=4480142 Score = 80.6 bits (88), Expect = 4e-13 Identities = 74/93 (80%), Gaps = 8/93 (9%) Strand=Plus/Minus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 || ||||| |||||||||||| ||| ||||| |||| ||||||||||||||| Sbjct 4308730 TCCTTATCAGAATTAACCAGAAGAATTGCTCCA-------AGAA-GGCCATGCACCACCA 4308679 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||| |||||||||||||| || ||| Sbjct 4308678 CCCACGGAATCCAGAAAGAGCTATCAGTCAGTC 4308646 >seq2956 Length=506764 Score = 78.8 bits (86), Expect = 1e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||||||||||||||| ||||||||||||||||||| || || |||||| |||| || Sbjct 221503 ACTCCACCAACTAAGAATGGCCATGCACCACCACCCACGGACTCGAGAAAGGACTATTAA 221562 Query 253 TCTGTC 258 | |||| Sbjct 221563 TTTGTC 221568 >seq1696 Length=1266530 Score = 77.0 bits (84), Expect = 5e-12 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| || ||| |||| | |||||||||||||||||||||||||||||| || Sbjct 316558 GTCAGTGTAGGATGCATGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 316616 Query 75 CAAACTTCCATTGGCT 90 ||| || || ||||| Sbjct 316617 CAATCT--CAGTGGCT 316630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796482038952