Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3288 302 8e-80 seq250 268 2e-69 seq1151 233 3e-59 seq1059 232 1e-58 seq579 203 6e-50 seq3425 201 2e-49 seq1009 197 2e-48 seq1571 181 2e-43 seq652 170 3e-40 seq50 163 5e-38 seq1882 161 2e-37 seq86 141 2e-31 seq758 138 2e-30 seq2232 98.7 2e-18 seq654 98.7 2e-18 seq438 93.3 7e-17 >seq3288 Length=111447 Score = 302 bits (334), Expect = 8e-80 Identities = 244/295 (83%), Gaps = 9/295 (3%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 22912 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 22853 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 22852 ACGACGGTCTAACCCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC-------- 22801 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||| ||||||||||||||||||| || || ||| Sbjct 22800 AATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGTGACATCACTA 22741 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 | || ||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 22740 TAAATGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 22681 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | || | |||||||| ||||| |||||||||| |||||||| Sbjct 22680 TAAAACCCCAAAGGTCAGAAGGATCGTGAGGCCCTGCTTTCATGGTCTGTATTCA 22626 >seq250 Length=1031391 Score = 268 bits (296), Expect = 2e-69 Identities = 236/293 (81%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 2 ACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||| ||| | |||||||| | | || |||||||||||||||||||||||||||||| Sbjct 928353 ACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTCA 928412 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | |||||||||||||||||||||| |||||||||||||||| |||||||| | || Sbjct 928413 CTATGGTCTAAACCCAGCTCACGTTCTGTATTAGTGGGTGAACACTCCAACGCCTGGTGA 928472 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||| ||||||||||||| ||||||||||||| ||||| |||| Sbjct 928473 ATTCTGCTTCACAATGATAGAAAGAGCCGACATCAAAGGATCAAAAAGTGACGTCACTAT 928532 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||| ||||||| |||||||||||||||||||||||||| |||| || |||||| || | Sbjct 928533 GAATGCTTGGCCCCCACAAGCCAGTTATCCCTGTGGTAAATTTTGTGACACCTCCTGCTT 928592 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | | | | |||||| | ||||| | |||||| ||| ||||| Sbjct 928593 AAAACCCCAAAGATCAGAAGGATTGTGAGGCCCCGCTTTCACGGTCCATATTC 928645 >seq1151 Length=2060792 Score = 233 bits (258), Expect = 3e-59 Identities = 211/263 (80%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||| |||||||| || ||||| |||||||||||||||| | Sbjct 2030297 TCATCAGTAGGGTAAAACTAATCTGTCTCACCACAGTCTAGTCCCAGCTCACGTTCCCAA 2030238 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||| |||| ||||||||| |||||||||||| ||||||| |||||| || Sbjct 2030237 TTAGTGGGTCAACATCCCAACGCTTGGTGAATTCTGCTTCAAAATGATAGAAAGAGCTGA 2030178 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| |||||||||||| || | | ||||||| |||||| |||||||||| |||| | Sbjct 2030177 CATCAAAGGATCAAAAA-CATC-ACTATATGAACACTTGGCCACCACAAGCCAATTATTC 2030120 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | || | |||||| | | | Sbjct 2030119 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAAGGATTGTGAAG 2030060 Query 271 CCACACTTTCATGGTTTGTATTC 293 | | |||||| ||| ||||||| Sbjct 2030059 ACCCGCTTTCACGGTCTGTATTC 2030037 >seq1059 Length=911991 Score = 232 bits (256), Expect = 1e-58 Identities = 173/203 (85%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| Sbjct 641736 TTAGTGGGTGAACAATCCAACGCTTGGTGACTTCTGCTTCACAATGATAGGAAGAGCCGA 641677 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 641676 GATGGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 641617 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | || | |||||||| ||| Sbjct 641616 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCGTGAGG 641557 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||| | ||| ||||||| Sbjct 641556 CCCCGCTTTTACGGTCTGTATTC 641534 >seq579 Length=1572779 Score = 203 bits (224), Expect = 6e-50 Identities = 204/264 (77%), Gaps = 1/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||| |||||| | |||| |||||| || |||||| |||| |||||||||| || Sbjct 511420 TCATTAGTAGAGTAAAATTTACCTATCTCATAACAGTCTAAGCCCAACTCACGTTCCATA 511479 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||| |||||||||||||| ||| |||| |||| || ||||||||||||| || Sbjct 511480 TTAGTGAGTGAACAATCCAACACTTGGTGAATCCTGCCTCTCAGTGATAGGAAGAGCTGA 511539 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || ||||||||||||||| || | ||| |||| |||| || | |||||||||||||| Sbjct 511540 CAAAGAAGGATCAAAAAGCGACATTGCTGTGAATGCTTAGCCACTGCAAGCCAGTTATCC 511599 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||| ||||||||||| ||| || || | ||| | | || | |||||| | | | Sbjct 511600 CTGTGTTAACTTTTCTGACACTTCCTGCTTAAAACCCCAAAGGTCAGAAGGAT-GTGAAG 511658 Query 271 CCACACTTTCATGGTTTGTATTCA 294 | |||||| ||| | |||||| Sbjct 511659 CTCTGCTTTCAGGGTCTTTATTCA 511682 >seq3425 Length=213250 Score = 201 bits (222), Expect = 2e-49 Identities = 178/220 (81%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135 ||||||| |||||||||||||| |||||||| |||||||| |||||| ||||| || Sbjct 19443 AGCTCACTTTCCCTATTAGTGGATGAACAATTCAACGCTTGGTGAATTCGGCTTCACAAT 19502 Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 195 |||||||||||| ||||| |||||||||||| |||| | ||| ||||| |||||||||| Sbjct 19503 GATAGGAAGAGCTGACATTGAAGGATCAAAACACAACATTGCTGTGAACACTTGGCTGCC 19562 Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255 |||||||||||||||||||||||||||||||| ||| || | || ||| | | || Sbjct 19563 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACTTCCTG-CTTAAAACCCCAAAGAT 19621 Query 256 TA-AAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 || |||||| | ||||| | |||| | || ||| |||| Sbjct 19622 TAGAAGGATTGTGAGGCCCCCCTTTTACAGTCTGTGTTCA 19661 >seq1009 Length=1958392 Score = 197 bits (218), Expect = 2e-48 Identities = 145/169 (86%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||| ||||||||||||||||| | |||||||| ||||| |||||||| Sbjct 633694 TCATCAGTAGGGGAAAACTAACCTGTCTCACAGCAGTCTAAACGCAGCTTGTGTTCCCTA 633753 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||| |||| |||||||||||| |||||||||||||| || Sbjct 633754 TTAGTGGGTGAACAATCCAGTGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGA 633813 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 ||||||||||||||| |||||| ||| | |||||||||||| |||||| Sbjct 633814 CATCGAAGGATCAAAGAGCAACATCGGTGTGAACGCTTGGCCACCACAA 633862 >seq1571 Length=3358496 Score = 181 bits (200), Expect = 2e-43 Identities = 199/264 (75%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||| ||||||||| |||||||||||||| || || || ||||||||| ||| ||| Sbjct 1647182 TCAACAGTAGGGTGAAACTAACCTGTCTTTCCACAGTGAAATTCCAGCTCACATTCTCTA 1647241 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||| ||| || || ||||| |||||| ||||| |||||||| | Sbjct 1647242 TTAG--GGTGAACGATCTGACCATTGATGAATTGTGCTTCACAGTGATAAGAAGAGCCAA 1647299 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||| || |||| | |||||||||| ||||||||||||||| ||||||| | Sbjct 1647300 CATCGAAGGATGGAAGAGCAGCATCGCTATGAATACTTGGCTGCCACAAGTCAGTTATGC 1647359 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 || |||||||| ||||| |||||| | | |||| | || | |||||| ||| Sbjct 1647360 CTCTGGTAACTCTTCTGACACCTCCTACTTAAAATACAAAAGGTCAGCAGGATCACGAGG 1647419 Query 271 CCACACTTTCATGGTTTGTATTCA 294 | || ||| ||||| | |||||| Sbjct 1647420 CTCCATTTTAATGGTCTATATTCA 1647443 >seq652 Length=3665652 Score = 170 bits (188), Expect = 3e-40 Identities = 144/176 (82%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||||||| ||||| |||||||||||| | | ||| || Sbjct 2828085 GAATTCTGCTTCACAATGATAGGAAGAGCTGACATTGAAGGATCAAAA-GTGATGTCACT 2828143 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 |||||| |||||| |||||||||||||||||||||||| ||||||||| |||||| || Sbjct 2828144 ATGAACACTTGGCCACCACAAGCCAGTTATCCCTGTGGTGACTTTTCTGACACCTCCTGC 2828203 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | | |||||||| ||||| |||||||||||| |||||||| Sbjct 2828204 TTAAAACCCCAAAGATCAGAAGGATCGGGAGGCCCCACTTTCATGGTCTGTATTCA 2828259 >seq50 Length=1664776 Score = 163 bits (180), Expect = 5e-38 Identities = 132/160 (83%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||||| ||| | ||||||||||||||| | |||||||||| ||||||||| Sbjct 6747 ATGATAGGAAGAGCTGACTTTGAAGGATCAAAAAGCGATCTCGCTATGAATGCTTGGCTG 6688 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253 |||||| ||||||||||||||||||||||||||| |||| || | |||| || || Sbjct 6687 CCACAAACCAGTTATCCCTGTGGTAACTTTTCTGAGGCCTCCTGCTTAAAATCCTGAAGG 6628 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||||||||| ||||| |||| ||||| ||||||| Sbjct 6627 TCAAAAGGATCGTGAGGCCCTGCTTTAATGGTCTGTATTC 6588 >seq1882 Length=1180154 Score = 161 bits (178), Expect = 2e-37 Identities = 119/138 (86%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| Sbjct 922614 TCATCAGTAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCCCACGTTCCCTA 922555 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATG--ATAGGAAGAGCC 148 |||| | ||||||||||||| |||| |||||||||||| ||| ||||||| ||| Sbjct 922554 TTAGGGAGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATATAGGAACAGCT 922495 Query 149 GACATCGAAGGATCAAAA 166 ||| | ||||| |||||| Sbjct 922494 GACGTTGAAGGGTCAAAA 922477 >seq86 Length=2782368 Score = 141 bits (156), Expect = 2e-31 Identities = 101/116 (87%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| || |||||||||||||||||| ||||||||||||||||| | || Sbjct 1005960 GAATTCTGCTTCAAAATTATAGGAAGAGCCGACATCCAAGGATCAAAAAGCAACATAACT 1005901 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 | |||| |||||| |||||| |||| |||||||||||||||||||||| |||||| Sbjct 1005900 ACGAACACTTGGCCACCACAATCCAGATATCCCTGTGGTAACTTTTCTGACACCTC 1005845 >seq758 Length=389181 Score = 138 bits (152), Expect = 2e-30 Identities = 100/116 (86%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||| ||| |||||||||||||| ||||||||||||||||||||| || || | Sbjct 174286 GAATTCTGTTTCACAATGATAGGAAGAGCTGACATCGAAGGATCAAAAAGCGACATCATT 174227 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||| ||||| ||| ||||||||||||||||| ||||||||||| | |||||| Sbjct 174226 GTGAACGTTTGGCCGCCGCAAGCCAGTTATCCCTGCGGTAACTTTTCGGACACCTC 174171 >seq2232 Length=1316620 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| | Sbjct 43656 ATTAGTGTGTGAACAATCCAACGCTTGGCGAATTCTGCTTCACAATGATAGGAAGAGCTG 43597 Query 150 ACATCGAAGGATCAAAA 166 ||||| |||||||| || Sbjct 43596 ACATCAAAGGATCAGAA 43580 >seq654 Length=2936080 Score = 98.7 bits (108), Expect = 2e-18 Identities = 92/116 (79%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| |||||||||||||||||| ||| | ||||||| |||||||||||||||||| Sbjct 2292161 TCATCGGTAGGGTAAAACTAACCTCTCTTACAGCGGTCTAGACCCAGCTCACGTTCCCTG 2292220 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 |||| ||||||||| | || |||| || |||| ||| | ||| |||| ||| Sbjct 2292221 TTAGCGGGTGAACAGACAAATGCTTGGTGAGTTCT-TTTCTGCTTGAGAGGATGAG 2292275 >seq438 Length=687716 Score = 93.3 bits (102), Expect = 7e-17 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||| | | |||| ||||||||||||||||| |||| | Sbjct 319097 TCATCAGTAGGGTAAAACTAACCTTTATGATGATGGTCTAAACCCAGCTCATGTTCTTTG 319156 Query 91 TTAGTGGGTGAACAAT 106 ||||| ||||||| || Sbjct 319157 TTAGTTGGTGAACCAT 319172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854048055552