Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1927 197 3e-48 seq1012 167 4e-39 seq626 143 5e-32 seq1696 141 2e-31 seq94 86.0 1e-14 >seq1927 Length=224990 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 222977 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 222920 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 222919 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 222860 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 222859 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 222800 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 222799 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 222740 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 222739 AAGTCCCTGCCCTTTGTA 222722 >seq1012 Length=341837 Score = 167 bits (184), Expect = 4e-39 Identities = 194/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | |||| || | ||||| |||||||||||||||| Sbjct 247830 CTTCTTAGAGGGACAAGTGGTGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 247887 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||| |||||||||||||| | || | | | | Sbjct 247888 ATGCCCTTAGATGTCCGGGGCTGCACACGCGCTACACTGACTGGCTCAGGGTGGGCCTAC 247947 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||| | ||| ||||| | | || ||| ||||| ||||||| | | ||| Sbjct 247948 CCTATGCCAGCAGGCGCCGGTAACCCGTTGAACCTCATTCGTGATGGGGATCGGGGATTA 248007 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| | ||||||| Sbjct 248008 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGAGTTGATT 248067 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 248068 AAGTCCCTGCCCTTTGTA 248085 >seq626 Length=3061481 Score = 143 bits (158), Expect = 5e-32 Identities = 170/225 (76%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||| ||||| ||||| ||||||||||| ||||||||| || | |||| |||||||| ||| Sbjct 1183263 AAGATTGAG-CAATACCAGGTCTGTGACGCCCTTAGACGTCCGGGGCTGCACGCGCACTA 1183321 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 ||||||| | || || || | | ||| || || ||| ||||||| | ||| ||| Sbjct 1183322 CACTGACTGGCTCAGCGTGTGCCTACCCTATGCTGGCAGGCGTGGGTAA-CCCGTTGAAC 1183380 Query 225 TCTG-TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 | | | ||| | ||||| | |||||| ||||| | | | || || |||| || |||| Sbjct 1183381 CCCGTTAGTGAT-GGGATCAGGGATTGCAGTTATTCCCCATGAATGATGAATTCCCAGTA 1183439 Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| ||||| ||| || ||||||| |||||||||||||||| Sbjct 1183440 AGTGCGGGTCATAAGCTTGCATTGATTAAGTCCCTGCCCTTTGTA 1183484 >seq1696 Length=1266530 Score = 141 bits (156), Expect = 2e-31 Identities = 168/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||| || |||| Sbjct 316622 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGCTGCATGCATCCTAC 316564 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | ||||| || | | ||| ||| | ||| ||||| || | || | Sbjct 316563 ACTGACTGGCTCAACGTGTGCCTACCCTACGCCTGCAGGCACAGGTAACCTGTTGAACCC 316504 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCT-TCAACGAGGAATGCCTAGTAA 284 | || | ||||||| | |||||||||||| |||| | || ||||||| || ||||| Sbjct 316503 CATTCATAATGGGGATCTGGGATTGCAATTATT-CTCTATGAATGAGGAATTCCCAGTAA 316445 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | || | ||| ||| | |||||||| |||||||||||||||| Sbjct 316444 GTACGGGCCATAAGCTTGTGTTGATTAAGTCCCTGCCCTTTGTA 316401 >seq94 Length=693165 Score = 86.0 bits (94), Expect = 1e-14 Identities = 82/101 (81%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| |||||||||||||||| Sbjct 211554 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 211611 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||| |||| |||| | ||||||||||| Sbjct 211612 ATGCCCTTAGATGTCTGGGGCTGCACATGTGCTACACTGAC 211652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946809829376