Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq250 84.2 4e-14 seq3288 77.0 5e-12 seq1882 73.4 6e-11 >seq250 Length=1031391 Score = 84.2 bits (92), Expect = 4e-14 Identities = 90/115 (78%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 |||| ||||||| | |||||| | ||||| | || | || |||| || || || | Sbjct 928350 GAGAAGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGG 928293 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 ||||||||||||||| |||||||| ||||| |||||||| ||||||||| |||| Sbjct 928292 CGAAGCTACCATCTGTGGGATTATGACTGAAAGCCTCTAAATCAGAATCC-TGCC 928239 >seq3288 Length=111447 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||| ||| ||| | |||||| | ||||| | || | || |||| || || | Sbjct 22910 GTACCAGAAGAAACGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 22967 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||| ||||||||| |||||||| ||||| ||||| |||||||||||| Sbjct 22968 GGGGCGAAGGTACCATCTGTAGGATTATGACTGAATGCCTCCAAGTCAGAATCC 23021 >seq1882 Length=1180154 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | ||||| | ||||| | || | || |||| || || | Sbjct 922643 GTACAAGAGGAACCGCAGG-TTCAGGC-ATTTGGTGTATGTGCTTGGCTGAGAAGCCAAT 922700 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||||||| || ||||| || ||| |||||||||||||| || Sbjct 922701 GGGGTGAAGCTACCATCTGTGGGGTTATGACTAAACACCTCTAAGTCAGAACCC 922754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818873100288