Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11 100 2e-16 seq1286 89.7 4e-13 >seq11 Length=524769 Score = 100 bits (110), Expect = 2e-16 Identities = 110/145 (76%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||| || Sbjct 418835 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTG 418776 Query 66109 ATTACTCTTGCGATTG-CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTT 66167 || ||||| | || || | ||| ||||| | ||| ||||| || || ||||| | Sbjct 418775 GTTGCTCTTCCTTTTTACAGGAATCTTTGTAGAGCATATACGGGGTACCTGTCTCTGTCT 418716 Query 66168 GGGACTCAATGATGGCGTGCCAAAG 66192 | |||||||||||||| | |||||| Sbjct 418715 GAGACTCAATGATGGCATACCAAAG 418691 >seq1286 Length=2059838 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||| || || || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 1560788 CAGGAAGTACAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 1560847 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 1560848 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 1560894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397368409930880