Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq18 185 4e-45 seq7 185 4e-45 seq6 185 4e-45 seq23 143 1e-32 >seq18 Length=66004023 Score = 185 bits (204), Expect = 4e-45 Identities = 102/102 (100%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58222915 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 58222974 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||||||||||||||||||||||||||||| Sbjct 58222975 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 58223016 Score = 185 bits (204), Expect = 4e-45 Identities = 102/102 (100%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58224685 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 58224626 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||||||||||||||||||||||||||||| Sbjct 58224625 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 58224584 Score = 122 bits (134), Expect = 4e-26 Identities = 67/67 (100%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 36 CGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATG 95 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58225800 CGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATG 58225741 Query 96 TGGCGTA 102 ||||||| Sbjct 58225740 TGGCGTA 58225734 Score = 98.7 bits (108), Expect = 5e-19 Identities = 56/57 (98%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 46 GGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 58235868 GGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGTGGGACATGTGGCGTA 58235812 >seq7 Length=112638659 Score = 185 bits (204), Expect = 4e-45 Identities = 102/102 (100%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 31760843 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 31760902 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||||||||||||||||||||||||||||| Sbjct 31760903 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 31760944 Score = 185 bits (204), Expect = 4e-45 Identities = 102/102 (100%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 31761899 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 31761958 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||||||||||||||||||||||||||||| Sbjct 31761959 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 31762000 Score = 185 bits (204), Expect = 4e-45 Identities = 102/102 (100%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 31762984 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 31763043 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||||||||||||||||||||||||||||| Sbjct 31763044 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 31763085 >seq6 Length=119458736 Score = 185 bits (204), Expect = 4e-45 Identities = 102/102 (100%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39641266 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 39641207 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||||||||||||||||||||||||||||| Sbjct 39641206 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 39641165 >seq23 Length=52530062 Score = 143 bits (158), Expect = 1e-32 Identities = 93/102 (91%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||| Sbjct 7199983 GGAAAAGAAACTAACCAGGATTCCCTCAGTAAGGGCCAGTGAACAGGGAACAACCCAGCG 7200042 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | ||||||| |||||||||||||| |||||||| ||||| || Sbjct 7200043 CGGAATCCCTGCCCCGCGGTGGGGAGCGGGACACGTGGCTTA 7200084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230393208960