Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq26 239 1e-60 >seq26 Length=51681464 Score = 239 bits (264), Expect = 1e-60 Identities = 221/282 (78%), Gaps = 26/282 (9%) Strand=Plus/Minus Query 235 GCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTG 294 |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||| ||| Sbjct 4832020 GCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTG 4831961 Query 295 CACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGT 354 ||||||||| |||||||||| |||| | |||||||| ||||||||||||||||| || Sbjct 4831960 GACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGCAGGATGAAGGCCTTCGGGTTGT 4831901 Query 355 AAA--GC-TCTGTCCTCAAGGAAGATA----------------------ATGACGGTACT 389 ||| || | ||| | || ||| | | |||||||||| Sbjct 4831900 AAACTGCTTTTGTACGGAACGAAAAGACTCTGGTTAATACCTGGGGTCCATGACGGTACC 4831841 Query 390 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 449 | || |||| |||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 4831840 GTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGC 4831781 Query 450 GTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 |||| |||||||||| |||||||||| ||||| ||| |||| Sbjct 4831780 GTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTT 4831740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497552915456