Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq26 172 1e-40 >seq26 Length=51681464 Score = 172 bits (190), Expect = 1e-40 Identities = 170/218 (78%), Gaps = 9/218 (4%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| ||||||||| || ||||| || | ||| || || Sbjct 4831804 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTACCGTCATGGACCC-CAGGT 4831862 Query 61 G-------GAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCC 113 || |||| | || || ||||| ||||||||| ||| || ||||||||| Sbjct 4831863 ATTAACCAGAGTCTTTTCGTTCCGTACAAAAGCAGTTTACAACCCGAAGG-CCTTCATCC 4831921 Query 114 TTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCT 173 | ||||| | ||||||| |||| || ||| |||||| |||| ||||| ||||||||||| Sbjct 4831922 TGCACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCACTGCTGCCT 4831981 Query 174 CCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGG 211 ||||||||||| ||| |||||||||||| ||| ||||| Sbjct 4831982 CCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGG 4832019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068766396928