Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq236526 291 2e-76 >seq236526 Length=526 Score = 291 bits (322), Expect = 2e-76 Identities = 251/308 (81%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 6 CGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTG 65 ||| ||| || |||||||||| |||||| || |||| |||||||| |||||||| | Sbjct 221 CGAACAGCGGAGTGAAATAGAACCTGAAACCATGCGCTTACAAGCGATCGGAGCCCTTTA 280 Query 66 ATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGT 125 | |||||||| ||||||||||||||||||||||||||||||||| | || || |||| Sbjct 281 GTGGGGTGACGGTGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCTTTACTGGCAAGGT 340 Query 126 TAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGT 185 ||||||||| ||| |||||| |||||| ||||||||| | | | |||||| ||| || Sbjct 341 TAAGGGCTTAAGGTCCGTTAACCGAAGCGAAAGCGAGTC-TGATAGGGCGCATAGTCAGT 399 Query 186 GGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGT 245 | ||||||||||||||||||||||||||||| | |||||||||| || ||||| || Sbjct 400 AGAGCTAGACGCGAAACCTTGTGATCTACCCATGGTCAGGTTGAAGGTGCCGTAACAGGT 459 Query 246 GATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGA 305 ||||||||||||||| ||| |||||||||| || ||||||| | ||||| |||||| Sbjct 460 ACTGGAGGACCGAACCGATAAGCGTTGAAAAGCTTCCGGATGAACTGTGGGTA-GGGTGA 518 Query 306 AAGGCCAA 313 ||||| || Sbjct 519 AAGGCTAA 526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 969229989376