Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq236526 232 2e-58 >seq236526 Length=526 Score = 232 bits (256), Expect = 2e-58 Identities = 292/387 (75%), Gaps = 17/387 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| | | || ||||||||| | |||||||||||||||||| | ||| Sbjct 509 CCACAGTTCATCCGG--AAGCTTTTCAACGCTTATCGGTTCGGTCCTCCAGTACCT-GTT 453 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 || ||||| ||||||| |||| || |||||| | ||||| || ||||| || | Sbjct 452 ACGGCACCTT-CAACCTGACCATGGG-TAGATCACAAGGTTT-CGCGTCTAGCTCT-ACT 397 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTC-----CCCTATTCGGTTAAG 183 ||||| ||||||| | ||||||||||| |||| || | || || | |||| Sbjct 396 GACTATGCGCCCTA-TCAGACTCGCTTT-CGCTTCGGTTAACGGACCTTAAGCCCTTAAC 339 Query 184 CTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 ||| |||| | || | ||| ||| | | |||||| ||||||| || | ||||||| || Sbjct 338 CTT-GCCAGTAAAGACTAACTCGTAGGCTCATTATGCAAAAGGCACACCGTCACCCCACT 280 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 || ||||||| | ||||||| || | ||||||||| ||||||||||||| || | || Sbjct 279 AAA-GGGCTCCGATCGCTTGTAAGCGCATGGTTTCAGGTTCTATTTCACTCCGCTGTTCG 221 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||| ||||||| |||| |||||||||||||||||||| |||| |||||||| Sbjct 220 CGGTTCTTTTCACCTTTCCTTCACAGTACTAGTTCACTATCGGTCTCTCAGGAGTATTTA 161 Query 363 GCCTTGGAGGATGGTCCCCCCATATTC 389 ||||| ||||||| || || |||| Sbjct 160 GCCTTACCGGATGGTGCCGGCAAATTC 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1237043539072