Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq349686 260 1e-64 seq348299 111 1e-19 seq348784 89.7 4e-13 >seq349686 Length=1138722 Score = 260 bits (288), Expect = 1e-64 Identities = 614/914 (67%), Gaps = 21/914 (2%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || || ||| || || || || || || | || || ||||| || | ||| Sbjct 731060 GAACCACTTCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTTCCTATCGAATACCATGAT 731001 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| ||||| || || || || |||||||| ||||| | |||||||| || | Sbjct 731000 ATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGACCTT 730941 Query 61147 TCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAAC 61204 ||||| ||||| | ||||||| | | | | | || || | |||| ||| | Sbjct 730940 TCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAGGAGAG--ATATTTTATTTCCC 730883 Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-T 61263 ||||| |||| |||||||| || || || || || ||||| || || |||| || | Sbjct 730882 ATGTGCTGGCTTTCTTTGCAGCAAGAGATGGCATAGTAAATGAAAACTTGGTGGAGCGGT 730823 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || || || || || || | | ||||| ||||||||||| |||||||| ||||||||| Sbjct 730822 TTAGC-CAAGAAGTTCAGATTACTGAGGCCCGTTGTTTCTATGGCTTCCAAATTGCCATG 730764 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || || | || || || ||||| ||| | ||||| || || ||||| | || Sbjct 730763 GAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGATTCCAAA 730704 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 ||| | ||| | ||||||||||| |||||||| || |||||| |||||| ||| Sbjct 730703 GAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAAGCAGAT 730644 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCAT 61501 |||||||| ||||| | |||| | ||||||| ||| ||||| || | || | Sbjct 730643 TGGGCCTTGCGCTGGAT--TGGGGACAAAGAAGCTACATATGGAGAACGTGTGGTAGCCT 730586 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | || || || | || || || || ||||| | || || ||| | |||| Sbjct 730585 TTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGCTCAAGA 730526 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGC 61620 |||| ||||| ||||| || || || || ||||| | || || || | ||||||||| Sbjct 730525 AACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCA-GAGACGAGGGC 730467 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 |||||||||| ||||| || | ||||||| | ||| || | | || || Sbjct 730466 TTGCATTGTGACTTTGCCTGCCTGATGTTCAAAC---ACCTGTTGCACAAATCTTCAGAA 730410 Query 61681 GAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGAC 61740 || | || || || | | || || | || |||||||| || || || || Sbjct 730409 CAGAGAGTAAAAGAAATAATCATCAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAG 730350 Query 61741 GCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTT 61800 || |||| || ||||| || |||||||| | ||| |||||| ||||| | Sbjct 730349 GCCCTGCCTGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATTGAGTGC 730290 Query 61801 GTTGCCGACCGTCTGTTGGTCGATTTGGG---TATGAAGCGGATCTATAATACGAAAAAC 61857 || || || | || || | || |||| || ||| | | | | || |||| Sbjct 730289 GTGGCAGATAGACTTATGCTGGAGCTGGGCTTTAGCAAG-GTTTTCAGAGTA--GAAAAT 730233 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917 |||||||| || ||||| | ||||| ||||| || ||||| || || || ||||| | Sbjct 730232 CCATTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAAGAGA 730173 Query 61918 GTAGGCGACTATCA 61931 ||||| || ||||| Sbjct 730172 GTAGGTGAGTATCA 730159 >seq348299 Length=121795 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||| || Sbjct 75342 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTG 75401 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||| || || || || ||||| || Sbjct 75402 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATATGGGGTACCTGTCTCTGTCTG 75461 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 75462 AGACTCAATGATGGCATACCAAAG 75485 >seq348784 Length=1834159 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||| || || || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 1488520 CAGGAAGTACAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 1488461 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 1488460 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 1488414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395789835251120