Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq6811 214 3e-53 seq5809 174 3e-41 seq2147 156 7e-36 seq6548 129 1e-27 >seq6811 Length=46538883 Score = 214 bits (236), Expect = 3e-53 Identities = 205/263 (78%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 || |||||||| || |||||||||||||| ||||| ||| |||||||||| ||| |||| Sbjct 2129085 CAGCAGTAGGGCAACACTAACCTGTCTCACCACGGTGTAATCCCAGCTCACATTCTCTAT 2129144 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||| ||||||||| |||||||||||| |||| |||||| || ||| Sbjct 2129145 CAGTGGGTGAACAACCCAACGCTTGGTGAATTCTGCTTCACAATGACAGGAAGTGCTGAC 2129204 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 | ||||||||||||||||| | | || |||| |||| || |||||||| ||||| || Sbjct 2129205 ACCGAAGGATCAAAAAGCAGCAACACTGTGAATGCTTAGCCACCACAAGCTGGTTATGCC 2129264 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||| | |||||||||| ||||| || | || | || | ||| ||| |||| Sbjct 2129265 TGTTGGAACTTTTCTGATACCTCCTGCTTAAAGCCCAAAAGGTCAGAAGTGTCGTGAGGC 2129324 Query 272 CACACTTTCATGGTTTGTATTCA 294 | |||||||||||| | |||||| Sbjct 2129325 CCCACTTTCATGGTCTATATTCA 2129347 >seq5809 Length=2500910 Score = 174 bits (192), Expect = 3e-41 Identities = 117/131 (89%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 2436906 TCGTCAGTGGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGGTCACGTTCCCTA 2436847 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||| Sbjct 2436846 TTAGTGGGTGAACAATTCAACGCTTGGTGAATACTGCTTCATAATGATAGGAAGAGCCGA 2436787 Query 151 CATCGAAGGAT 161 || | |||||| Sbjct 2436786 CACCAAAGGAT 2436776 >seq2147 Length=24672720 Score = 156 bits (172), Expect = 7e-36 Identities = 104/116 (90%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 4963307 TCATCAGCGGGGTAAAACTAACCTGTCTCACGACAATCTAAACCCAGCTCACGTTCCCTA 4963248 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||||||||||||||||||||||||| |||||||| ||| ||||||||||||| Sbjct 4963247 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGTTTCACAATGATAGGAAGAG 4963192 >seq6548 Length=8158244 Score = 129 bits (142), Expect = 1e-27 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||| ||||||| |||||||||| | |||||| ||||||||| |||||||| Sbjct 3258267 TCATCAGTAGAATAAAACTGACCTGTCTCACAAGGGTCTACTCCCAGCTCATGTTCCCTA 3258326 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 |||||||||||||||||||| |||| || ||||||||| |||||||||| || Sbjct 3258327 TTAGTGGGTGAACAATCCAATGCTTGGTGACTTCTGCTTCACAATGATAGGAAAAG 3258382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854097072480