Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq8279 435 1e-119
seq884 374 3e-101
seq3392 269 9e-70
seq4814 176 1e-41
seq8503 172 2e-40
seq1683 87.8 6e-15
seq2095 80.6 9e-13
seq5300 77.0 1e-11
>seq8279
Length=11182204
Score = 435 bits (482), Expect = 1e-119
Identities = 275/297 (93%), Gaps = 3/297 (1%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||| | ||| ||||| | | ||||||||||||||||||
Sbjct 7947364 CTCCCACTTATTCTACACCTAT---GTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 7947308
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
Sbjct 7947307 CAGGGTCTTCTTTCCCCGCTGATTCCCCCAAGCCCGTTCCCTTGGCTGTAGTTTCGCTGG 7947248
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 7947247 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 7947188
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7947187 ATGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 7947128
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 7947127 TTGAGTTTCTTCACTTTGACGTTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 7947071
>seq884
Length=9820152
Score = 374 bits (414), Expect = 3e-101
Identities = 260/294 (88%), Gaps = 2/294 (1%)
Strand=Plus/Plus
Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297
|||||||| |||||||||||||| ||| ||||| | | | ||||||| ||||||||||
Sbjct 4035054 TCCCACTTTTTCTACACCTCTCATGTCTCTTCACCATGCCAGACTAGAACCAAGCTCAAC 4035113
Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357
|||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||| ||
Sbjct 4035114 AGGGTCTTCTTTCCCCACTGATTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTTGCTGGA 4035173
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
||||| |||||||||||||||||||| || |||||||| | |||||||||||||||
Sbjct 4035174 TAGTAAGTAGGGACAGTGGGAATCTCGC--ATAAATTCATGCACATCACTAATTAGATGA 4035231
Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477
||||| |||||||||||||||||||||||||||||||| | | ||||||| |||| |
Sbjct 4035232 CGAGGTGTTTGGCTACCTTAAGAGAGTCATAGTTACTCCTGACATTTACCCATGCTTCAT 4035291
Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 4035292 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAA 4035345
>seq3392
Length=10974801
Score = 269 bits (298), Expect = 9e-70
Identities = 240/298 (81%), Gaps = 8/298 (3%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||||||||||| ||| |||| ||||| ||||| ||| |||| ||||||||||||
Sbjct 9780568 CTCCCACTTAT---ACATCTCTTAAGTCTCTTCACTGTGTCAGACTGGAGTCAAGCTCAG 9780624
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|| ||||| ||||||| |||| || || ||||| || ||| ||||||| ||||| || |
Sbjct 9780625 CAAGGTCTCATTTCCCCACTGACTCTGCGAAGCCTGT-CCCGTGGCTGTAGTTTCACTGG 9780683
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
| || || |||||||||||||||||| ||| | ||||||||| ||| ||||| |||||
Sbjct 9780684 ACAGAAGGTAGGGACAGTGGGAATCTTGTTCACCCATTCATGTATGTCCCTAATCAGATG 9780743
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
|| |||||||||| |||| ||||||| | ||||||||||| || |||||| | ||||
Sbjct 9780744 ACAAGGCATTTGGGTACCATAAGAGAATGCTAGTTACTCCCACCATTTACCTGTGCTTCA 9780803
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534
||| ||| |||||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 9780804 CTGA----CTTGACTTTGACATTCAGAGCACTAGGCAGAAATTACATTGCATCAACAT 9780857
>seq4814
Length=14875946
Score = 176 bits (194), Expect = 1e-41
Identities = 185/241 (77%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341
|| ||||| | |||| | |||| |||| ||| | |||| ||||| | | |||||||
Sbjct 10844034 TACAGTCAGGTTCAAGGGAGTCTGCTTTGCCCACAGATTTTGCCAAACTA-TCCCCTTGG 10843976
Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401
|| ||||||| ||||| || || ||||| ||| | || || ||||||||||||||
Sbjct 10843975 CTCTGGTTTCATCAGATAACAGGTAAAAACAGTAGGAGTATCATTCATCCATTCATGCGC 10843916
Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCC 460
|| ||||||||||| || |||||||||| ||||||| | ||||| |||| ||| |
Sbjct 10843915 ATCCCTAATTAGATGGTGAAGCATTTGGCTGTCTTAAGAAAATCATAATTACACCCATCA 10843856
Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
|||||| | |||| ||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 10843855 ATTTACCTGGGCTTCAGCGAATTTCTTCAGTTTGACATTCAAAGCACTGGGCAAAAATCA 10843796
Query 521 C 521
|
Sbjct 10843795 C 10843795
>seq8503
Length=28787257
Score = 172 bits (190), Expect = 2e-40
Identities = 126/145 (87%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294
|||| ||||||||| || ||| |||| ||| ||||| | | ||||||||||||||||
Sbjct 18254402 GGCTTCCACTTATTGTATACCGCTCATGTCTCTTCACTGTGCCAGACTAGAGTCAAGCTC 18254461
Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354
||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||
Sbjct 18254462 AACAGGGTCTTCTTTCCTCGCTGATTCCGCCAAGCCAGTTCCC-TGGCTGTGGTTTCACT 18254520
Query 355 AGATAGTAGATAGGGACAGTGGGAA 379
||| |||| |||||||||||||||
Sbjct 18254521 GGATGGTAGGTAGGGACAGTGGGAA 18254545
>seq1683
Length=8760594
Score = 87.8 bits (96), Expect = 6e-15
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491
||||||||||||||||||| ||||| | |||||| | | || |||| ||||||||||
Sbjct 5596159 ACCTTAAGAGAGTCATAGTGACTCCAACTATTTACCTGTGTTTCCTTGACTTTCTTCACT 5596100
Query 492 TTGACATTCAGAGCACTG 509
|||||||||||| |||||
Sbjct 5596099 TTGACATTCAGAACACTG 5596082
>seq2095
Length=12179719
Score = 80.6 bits (88), Expect = 9e-13
Identities = 111/153 (73%), Gaps = 13/153 (8%)
Strand=Plus/Minus
Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCC-GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363
|| ||||| |||||||| ||||||||| | | ||||| || |||| || | | |||
Sbjct 10467536 TCCTTCCCTGCTGATTCTGCCAAGCCCTGGTTATTTGGCAGTA-TTTCACTGGCTCCTAG 10467478
Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423
||||||||||||| | ||||| ||| || |||||| ||||||| || |
Sbjct 10467477 GTAGGGACAGTGGG---------AGTCCATACATAGGCATCACTATGTAGATGATGAAGT 10467427
Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456
||||||||| || ||||||||||||| |||
Sbjct 10467426 ATTTGGCTAGTGTA--AGAGTCATAGTTATTCC 10467396
>seq5300
Length=11616875
Score = 77.0 bits (84), Expect = 1e-11
Identities = 107/147 (73%), Gaps = 11/147 (7%)
Strand=Plus/Plus
Query 377 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTT 436
|||||| | | ||||||||| ||| | || |||||| |||||||||| |||||||
Sbjct 11144590 GAATCTTGGTCTTCCATTCATAACTGTC--TGATGAGATGATGAGGCATTTGACTACCTT 11144647
Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496
||||||| |||| ||| |||| || ||| ||| ||||||||||| ||||
Sbjct 11144648 -------TCATAGTCACTCT-GCCATTTATTTGC-CTTTATTGTATTTCTTCACTGTGAC 11144698
Query 497 ATTCAGAGCACTGGGCAGAAATCACAT 523
|| | || |||| | ||||||||||
Sbjct 11144699 TTTGAAAGTCCTGGACGGAAATCACAT 11144725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634620239840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |