Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq8279 435 1e-119 seq884 374 3e-101 seq3392 269 9e-70 seq4814 176 1e-41 seq8503 172 2e-40 seq1683 87.8 6e-15 seq2095 80.6 9e-13 seq5300 77.0 1e-11 >seq8279 Length=11182204 Score = 435 bits (482), Expect = 1e-119 Identities = 275/297 (93%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||| | ||| ||||| | | |||||||||||||||||| Sbjct 7947364 CTCCCACTTATTCTACACCTAT---GTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 7947308 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | Sbjct 7947307 CAGGGTCTTCTTTCCCCGCTGATTCCCCCAAGCCCGTTCCCTTGGCTGTAGTTTCGCTGG 7947248 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 7947247 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 7947188 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7947187 ATGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 7947128 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 7947127 TTGAGTTTCTTCACTTTGACGTTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 7947071 >seq884 Length=9820152 Score = 374 bits (414), Expect = 3e-101 Identities = 260/294 (88%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 |||||||| |||||||||||||| ||| ||||| | | | ||||||| |||||||||| Sbjct 4035054 TCCCACTTTTTCTACACCTCTCATGTCTCTTCACCATGCCAGACTAGAACCAAGCTCAAC 4035113 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 |||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||| || Sbjct 4035114 AGGGTCTTCTTTCCCCACTGATTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTTGCTGGA 4035173 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 ||||| |||||||||||||||||||| || |||||||| | ||||||||||||||| Sbjct 4035174 TAGTAAGTAGGGACAGTGGGAATCTCGC--ATAAATTCATGCACATCACTAATTAGATGA 4035231 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 ||||| |||||||||||||||||||||||||||||||| | | ||||||| |||| | Sbjct 4035232 CGAGGTGTTTGGCTACCTTAAGAGAGTCATAGTTACTCCTGACATTTACCCATGCTTCAT 4035291 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 4035292 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAA 4035345 >seq3392 Length=10974801 Score = 269 bits (298), Expect = 9e-70 Identities = 240/298 (81%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| ||| |||| ||||| ||||| ||| |||| |||||||||||| Sbjct 9780568 CTCCCACTTAT---ACATCTCTTAAGTCTCTTCACTGTGTCAGACTGGAGTCAAGCTCAG 9780624 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || ||||| ||||||| |||| || || ||||| || ||| ||||||| ||||| || | Sbjct 9780625 CAAGGTCTCATTTCCCCACTGACTCTGCGAAGCCTGT-CCCGTGGCTGTAGTTTCACTGG 9780683 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 | || || |||||||||||||||||| ||| | ||||||||| ||| ||||| ||||| Sbjct 9780684 ACAGAAGGTAGGGACAGTGGGAATCTTGTTCACCCATTCATGTATGTCCCTAATCAGATG 9780743 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 || |||||||||| |||| ||||||| | ||||||||||| || |||||| | |||| Sbjct 9780744 ACAAGGCATTTGGGTACCATAAGAGAATGCTAGTTACTCCCACCATTTACCTGTGCTTCA 9780803 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 ||| ||| |||||||||||||||||||| ||||||||| ||||||| ||||||| Sbjct 9780804 CTGA----CTTGACTTTGACATTCAGAGCACTAGGCAGAAATTACATTGCATCAACAT 9780857 >seq4814 Length=14875946 Score = 176 bits (194), Expect = 1e-41 Identities = 185/241 (77%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 || ||||| | |||| | |||| |||| ||| | |||| ||||| | | ||||||| Sbjct 10844034 TACAGTCAGGTTCAAGGGAGTCTGCTTTGCCCACAGATTTTGCCAAACTA-TCCCCTTGG 10843976 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 || ||||||| ||||| || || ||||| ||| | || || |||||||||||||| Sbjct 10843975 CTCTGGTTTCATCAGATAACAGGTAAAAACAGTAGGAGTATCATTCATCCATTCATGCGC 10843916 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCC 460 || ||||||||||| || |||||||||| ||||||| | ||||| |||| ||| | Sbjct 10843915 ATCCCTAATTAGATGGTGAAGCATTTGGCTGTCTTAAGAAAATCATAATTACACCCATCA 10843856 Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||| | |||| ||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 10843855 ATTTACCTGGGCTTCAGCGAATTTCTTCAGTTTGACATTCAAAGCACTGGGCAAAAATCA 10843796 Query 521 C 521 | Sbjct 10843795 C 10843795 >seq8503 Length=28787257 Score = 172 bits (190), Expect = 2e-40 Identities = 126/145 (87%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||| ||||||||| || ||| |||| ||| ||||| | | |||||||||||||||| Sbjct 18254402 GGCTTCCACTTATTGTATACCGCTCATGTCTCTTCACTGTGCCAGACTAGAGTCAAGCTC 18254461 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| || Sbjct 18254462 AACAGGGTCTTCTTTCCTCGCTGATTCCGCCAAGCCAGTTCCC-TGGCTGTGGTTTCACT 18254520 Query 355 AGATAGTAGATAGGGACAGTGGGAA 379 ||| |||| ||||||||||||||| Sbjct 18254521 GGATGGTAGGTAGGGACAGTGGGAA 18254545 >seq1683 Length=8760594 Score = 87.8 bits (96), Expect = 6e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 ||||||||||||||||||| ||||| | |||||| | | || |||| |||||||||| Sbjct 5596159 ACCTTAAGAGAGTCATAGTGACTCCAACTATTTACCTGTGTTTCCTTGACTTTCTTCACT 5596100 Query 492 TTGACATTCAGAGCACTG 509 |||||||||||| ||||| Sbjct 5596099 TTGACATTCAGAACACTG 5596082 >seq2095 Length=12179719 Score = 80.6 bits (88), Expect = 9e-13 Identities = 111/153 (73%), Gaps = 13/153 (8%) Strand=Plus/Minus Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCC-GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 || ||||| |||||||| ||||||||| | | ||||| || |||| || | | ||| Sbjct 10467536 TCCTTCCCTGCTGATTCTGCCAAGCCCTGGTTATTTGGCAGTA-TTTCACTGGCTCCTAG 10467478 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 ||||||||||||| | ||||| ||| || |||||| ||||||| || | Sbjct 10467477 GTAGGGACAGTGGG---------AGTCCATACATAGGCATCACTATGTAGATGATGAAGT 10467427 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 ||||||||| || ||||||||||||| ||| Sbjct 10467426 ATTTGGCTAGTGTA--AGAGTCATAGTTATTCC 10467396 >seq5300 Length=11616875 Score = 77.0 bits (84), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 11/147 (7%) Strand=Plus/Plus Query 377 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTT 436 |||||| | | ||||||||| ||| | || |||||| |||||||||| ||||||| Sbjct 11144590 GAATCTTGGTCTTCCATTCATAACTGTC--TGATGAGATGATGAGGCATTTGACTACCTT 11144647 Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||| |||| ||| |||| || ||| ||| ||||||||||| |||| Sbjct 11144648 -------TCATAGTCACTCT-GCCATTTATTTGC-CTTTATTGTATTTCTTCACTGTGAC 11144698 Query 497 ATTCAGAGCACTGGGCAGAAATCACAT 523 || | || |||| | |||||||||| Sbjct 11144699 TTTGAAAGTCCTGGACGGAAATCACAT 11144725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634620239840