Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq35449 129 2e-27 seq2226 122 3e-25 seq7664 111 5e-22 seq7691 102 2e-19 seq2165 102 2e-19 seq4066 100 9e-19 seq2144 100 9e-19 seq1717 98.7 3e-18 >seq35449 Length=16283089 Score = 129 bits (142), Expect = 2e-27 Identities = 132/167 (79%), Gaps = 9/167 (5%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACT-ATCAAA 398 ||| | | |||||||| ||||||||| |||||||| |||| | || | | | |||| Sbjct 11637588 GCAGGGAATAGCTCTATAATTACCACAGTTATCCAAGTAGGAGAGGAGCAAGTGACCAAA 11637529 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTT 457 ||| ||||||||||||| ||||||||||||||||||||| | || || | ||||| Sbjct 11637528 GCAACTATAACTGATTTAACGAGCCATTCGCAGTTTCACTGAACCAGCCTG--TGTACTT 11637471 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| |||| ||||| ||||||| ||| ||||| |||||| ||| Sbjct 11637470 AGACATGAATGGTTTAATTTTTGAGAAAAGTATATG-CTACTGTCAG 11637425 >seq2226 Length=3624272 Score = 122 bits (134), Expect = 3e-25 Identities = 96/112 (86%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTA 452 |||| ||| |||| |||||||||||||||||| || |||||||||| | ||| | Sbjct 2291006 CAAAGGAACCATAAGTGATTTAATGAGCCATTCACAATTTCACTGTACTGGCCATGC--A 2290949 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 2290948 TACTTAGACATGCATGGCTTAATCTTTGAGAAAAGCATATG-CTACTGGCAG 2290898 >seq7664 Length=22377 Score = 111 bits (122), Expect = 5e-22 Identities = 122/159 (77%), Gaps = 5/159 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||| |||||||| ||||| | || |||||| ||||||| ||||| |||| ||| | Sbjct 5748 GTAATCATTCCATTTACAGGGCCTCAAAAGTCTCCTGTAT---TATTT-TTGTTACTCCT 5803 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | | || || | || ||||||||| | ||||||||||||||||||||| ||| || | Sbjct 5804 TTTTTGGGTTGGAAGTGAGTAATTTGCACACCTGCTGCCTTCCTTGGATGTAGTACCCAT 5863 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 | ||||| |||||| || |||||| | |||| ||| ||| Sbjct 5864 TCCTCAGCCTCCCTTTCAGGAATCAAGCCCTGATTTCCC 5902 Score = 109 bits (120), Expect = 2e-21 Identities = 128/171 (75%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 338 tttttAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CT 392 || ||| |||||||| |||| |||||||| ||||| || || || | | | Sbjct 6123 TTATTATGATGTATTATATCTACAATTACCA--GTTATTCAAACAGGAAAGGAGCAAGCA 6180 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452 | |||| ||| | || |||||||||||||||||| || |||||||||| || | Sbjct 6181 ACCAAAGGAACCAAAATTGATTTAATGAGCCATTCACAATTTCACTGTACCAGCTGGGTG 6240 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||| || |||| ||||||||||||||||||||||||||||| ||| |||| Sbjct 6241 TACGTAAACATCCATGGCTTAATCTTTGAGACAAGCATATG-TTACGGGCA 6290 >seq7691 Length=3662283 Score = 102 bits (112), Expect = 2e-19 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 68 TCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGG 127 || ||| |||| ||||||| |||||||||||||| ||||||||||||| |||||||||| Sbjct 2407572 TCTGGAGTGGGGAATTTGCATGCCTGCTGCCTTCCCTGGATGTGGTAGCAGTTTCTCAGG 2407631 Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 |||||| ||| |||| | ||||||| ||| Sbjct 2407632 CTCCCTGTCCAGAATTATATCCTAATTTCCC 2407662 >seq2165 Length=8260879 Score = 102 bits (112), Expect = 2e-19 Identities = 90/110 (82%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| ||| ||| ||||||||| |||||||||| |||||||| Sbjct 2412224 ACTCATTCCAATTACAGGACATTGAAAAAGCCCTGTACTGTTATTTATTGTTACTACCTC 2412165 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG 111 ||| ||| ||| |||||||||||| | |||| |||| ||||||| |||| Sbjct 2412164 CCCAGGTCAGGAGTGGGTAATTTGCACACCTGTTGCCATCCTTGG-TGTG 2412116 >seq4066 Length=11934751 Score = 100 bits (110), Expect = 9e-19 Identities = 129/172 (75%), Gaps = 16/172 (9%) Strand=Plus/Plus Query 346 ATGTATTAGCTCTAGAATTACCACGG------TTATCCATGTAGTA----AGGTA-CTAT 394 || |||| |||||||||||| || ||||| |||||| | ||| | | || Sbjct 9487019 ATATATTCGCTCTAGAATTAGCAGTTATCTACTTATCTATGTAGGAGAGGAGGGAGCGAT 9487078 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTA 452 |||| ||| ||||||||||||| |||||| | ||| |||| || || || ||| || Sbjct 9487079 CAAAGGAACCATAACTGATTTAAGGAGCCACTTGCACTTTCCCTTTACCAGCCCTGCGTA 9487138 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||||||| |||||||||||||||||||||||| || |||||||||| Sbjct 9487139 CA--TAGACATGTTTGGCTTAATCTTTGAGACAAGCATGTG-CTACTGGCAG 9487187 Score = 89.7 bits (98), Expect = 2e-15 Identities = 106/143 (74%), Gaps = 13/143 (9%) Strand=Plus/Plus Query 45 TTTATTGTCACTACCTCCCCGT--GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||| |||| |||||||| || ||| | | |||||||| ||| |||||||| Sbjct 9486684 TTTCTTGTAACTACCTC---GTAAGTCAGAAGTGGGTAATGTGC--------TGCCTTCC 9486732 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || || ||||||||| ||||| || ||| ||||| | ||| |||||| ||| ||| | | Sbjct 9486733 TTAGACGTGGTAGCCTTTTCTTAGACTCTCTCTCTGAAATAAAACCCTTATTTCCCATCA 9486792 Query 163 CCCGTTGATACCATGGTAGGCCA 185 ||||| |||||||||||||| Sbjct 9486793 CCCGTGCTCACCATGGTAGGCCA 9486815 >seq2144 Length=2772261 Score = 100 bits (110), Expect = 9e-19 Identities = 119/155 (77%), Gaps = 11/155 (7%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTA----CTATCAAA 398 |||||||||||| ||||| ||| | | |||||||| | || | ||| | | |||| Sbjct 651816 GCATGTATTAGCGCTAGAGTTAAC-CAGTTATCCAAGCAGAAGAGGCGTGAGCAACCAAA 651874 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTT 457 ||| ||||||||| ||||||||||||| |||||| |||| | || ||| ||||| Sbjct 651875 GGAACAATAACTGATATAATGAGCCATTCACAGTTTTACTGCACCAGCATGC--GTACTT 651932 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 |||| ||||||| || |||||| ||||||||||| Sbjct 651933 AGACGTGCATGGATTCATCTTT--GACAAGCATAT 651965 >seq1717 Length=26012 Score = 98.7 bits (108), Expect = 3e-18 Identities = 120/159 (75%), Gaps = 5/159 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||| |||||||| ||||| | || || ||| ||||||| || |||| || ||| | Sbjct 19944 GTAATCATTCCATTTACAGGGCCACACAAGTCTCCTGTATTAG-ATTTGTTA-CAC--CT 19999 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | | | || | || ||||||||| | ||||||||||||||||||||| |||||| | Sbjct 20000 TTTTTGGTTTGGAAGTGAGTAATTTGCACACCTGCTGCCTTCCTTGGATGTAGTAGCCAT 20059 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 ||||||| ||| || || |||||| | |||| ||| ||| Sbjct 20060 TTCTCAGCCTCACTTTCAGGAATCAAGCCCTGATTTCCC 20098 Score = 98.7 bits (108), Expect = 3e-18 Identities = 122/163 (75%), Gaps = 8/163 (5%) Strand=Plus/Plus Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-CTATCAAATAAACG 404 |||||||| ||||| |||||||| ||||| | || || | | | | ||| ||| | Sbjct 20326 ATGTATTATCTCTACAATTACCA--GTTATTAAAACAGCAAAGGAGCAAGCAACCAAAGG 20383 Query 405 ATAA----CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 | || |||||||| |||||||||| || ||||||||||| || | ||| || | Sbjct 20384 ACAAAAAACTGATTTAGTGAGCCATTCACAATTTCACTGTATCAGCTGGGTGTACATAAA 20443 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||| | | ||||||||||||||||||||||||| ||| |||| Sbjct 20444 CATCCGTAGCTTAATCTTTGAGACAAGCATATG-TTACGGGCA 20485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509864487680