Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq35449 129 2e-27
seq2226 122 3e-25
seq7664 111 5e-22
seq7691 102 2e-19
seq2165 102 2e-19
seq4066 100 9e-19
seq2144 100 9e-19
seq1717 98.7 3e-18
>seq35449
Length=16283089
Score = 129 bits (142), Expect = 2e-27
Identities = 132/167 (79%), Gaps = 9/167 (5%)
Strand=Plus/Minus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACT-ATCAAA 398
||| | | |||||||| ||||||||| |||||||| |||| | || | | | ||||
Sbjct 11637588 GCAGGGAATAGCTCTATAATTACCACAGTTATCCAAGTAGGAGAGGAGCAAGTGACCAAA 11637529
Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTT 457
||| ||||||||||||| ||||||||||||||||||||| | || || | |||||
Sbjct 11637528 GCAACTATAACTGATTTAACGAGCCATTCGCAGTTTCACTGAACCAGCCTG--TGTACTT 11637471
Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||| |||| ||||| ||||||| ||| ||||| |||||| |||
Sbjct 11637470 AGACATGAATGGTTTAATTTTTGAGAAAAGTATATG-CTACTGTCAG 11637425
>seq2226
Length=3624272
Score = 122 bits (134), Expect = 3e-25
Identities = 96/112 (86%), Gaps = 5/112 (4%)
Strand=Plus/Minus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTA 452
|||| ||| |||| |||||||||||||||||| || |||||||||| | ||| |
Sbjct 2291006 CAAAGGAACCATAAGTGATTTAATGAGCCATTCACAATTTCACTGTACTGGCCATGC--A 2290949
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 2290948 TACTTAGACATGCATGGCTTAATCTTTGAGAAAAGCATATG-CTACTGGCAG 2290898
>seq7664
Length=22377
Score = 111 bits (122), Expect = 5e-22
Identities = 122/159 (77%), Gaps = 5/159 (3%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
||| |||||||| ||||| | || |||||| ||||||| ||||| |||| ||| |
Sbjct 5748 GTAATCATTCCATTTACAGGGCCTCAAAAGTCTCCTGTAT---TATTT-TTGTTACTCCT 5803
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
| | || || | || ||||||||| | ||||||||||||||||||||| ||| || |
Sbjct 5804 TTTTTGGGTTGGAAGTGAGTAATTTGCACACCTGCTGCCTTCCTTGGATGTAGTACCCAT 5863
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158
| ||||| |||||| || |||||| | |||| ||| |||
Sbjct 5864 TCCTCAGCCTCCCTTTCAGGAATCAAGCCCTGATTTCCC 5902
Score = 109 bits (120), Expect = 2e-21
Identities = 128/171 (75%), Gaps = 8/171 (5%)
Strand=Plus/Plus
Query 338 tttttAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CT 392
|| ||| |||||||| |||| |||||||| ||||| || || || | | |
Sbjct 6123 TTATTATGATGTATTATATCTACAATTACCA--GTTATTCAAACAGGAAAGGAGCAAGCA 6180
Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452
| |||| ||| | || |||||||||||||||||| || |||||||||| || |
Sbjct 6181 ACCAAAGGAACCAAAATTGATTTAATGAGCCATTCACAATTTCACTGTACCAGCTGGGTG 6240
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503
||| || |||| ||||||||||||||||||||||||||||| ||| ||||
Sbjct 6241 TACGTAAACATCCATGGCTTAATCTTTGAGACAAGCATATG-TTACGGGCA 6290
>seq7691
Length=3662283
Score = 102 bits (112), Expect = 2e-19
Identities = 77/91 (85%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 68 TCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGG 127
|| ||| |||| ||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct 2407572 TCTGGAGTGGGGAATTTGCATGCCTGCTGCCTTCCCTGGATGTGGTAGCAGTTTCTCAGG 2407631
Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCC 158
|||||| ||| |||| | ||||||| |||
Sbjct 2407632 CTCCCTGTCCAGAATTATATCCTAATTTCCC 2407662
>seq2165
Length=8260879
Score = 102 bits (112), Expect = 2e-19
Identities = 90/110 (82%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| ||| ||| ||||||||| |||||||||| ||||||||
Sbjct 2412224 ACTCATTCCAATTACAGGACATTGAAAAAGCCCTGTACTGTTATTTATTGTTACTACCTC 2412165
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG 111
||| ||| ||| |||||||||||| | |||| |||| ||||||| ||||
Sbjct 2412164 CCCAGGTCAGGAGTGGGTAATTTGCACACCTGTTGCCATCCTTGG-TGTG 2412116
>seq4066
Length=11934751
Score = 100 bits (110), Expect = 9e-19
Identities = 129/172 (75%), Gaps = 16/172 (9%)
Strand=Plus/Plus
Query 346 ATGTATTAGCTCTAGAATTACCACGG------TTATCCATGTAGTA----AGGTA-CTAT 394
|| |||| |||||||||||| || ||||| |||||| | ||| | | ||
Sbjct 9487019 ATATATTCGCTCTAGAATTAGCAGTTATCTACTTATCTATGTAGGAGAGGAGGGAGCGAT 9487078
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTA 452
|||| ||| ||||||||||||| |||||| | ||| |||| || || || ||| ||
Sbjct 9487079 CAAAGGAACCATAACTGATTTAAGGAGCCACTTGCACTTTCCCTTTACCAGCCCTGCGTA 9487138
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
| |||||||| |||||||||||||||||||||||| || ||||||||||
Sbjct 9487139 CA--TAGACATGTTTGGCTTAATCTTTGAGACAAGCATGTG-CTACTGGCAG 9487187
Score = 89.7 bits (98), Expect = 2e-15
Identities = 106/143 (74%), Gaps = 13/143 (9%)
Strand=Plus/Plus
Query 45 TTTATTGTCACTACCTCCCCGT--GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||| |||| |||||||| || ||| | | |||||||| ||| ||||||||
Sbjct 9486684 TTTCTTGTAACTACCTC---GTAAGTCAGAAGTGGGTAATGTGC--------TGCCTTCC 9486732
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
|| || ||||||||| ||||| || ||| ||||| | ||| |||||| ||| ||| | |
Sbjct 9486733 TTAGACGTGGTAGCCTTTTCTTAGACTCTCTCTCTGAAATAAAACCCTTATTTCCCATCA 9486792
Query 163 CCCGTTGATACCATGGTAGGCCA 185
||||| ||||||||||||||
Sbjct 9486793 CCCGTGCTCACCATGGTAGGCCA 9486815
>seq2144
Length=2772261
Score = 100 bits (110), Expect = 9e-19
Identities = 119/155 (77%), Gaps = 11/155 (7%)
Strand=Plus/Plus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTA----CTATCAAA 398
|||||||||||| ||||| ||| | | |||||||| | || | ||| | | ||||
Sbjct 651816 GCATGTATTAGCGCTAGAGTTAAC-CAGTTATCCAAGCAGAAGAGGCGTGAGCAACCAAA 651874
Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTT 457
||| ||||||||| ||||||||||||| |||||| |||| | || ||| |||||
Sbjct 651875 GGAACAATAACTGATATAATGAGCCATTCACAGTTTTACTGCACCAGCATGC--GTACTT 651932
Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492
|||| ||||||| || |||||| |||||||||||
Sbjct 651933 AGACGTGCATGGATTCATCTTT--GACAAGCATAT 651965
>seq1717
Length=26012
Score = 98.7 bits (108), Expect = 3e-18
Identities = 120/159 (75%), Gaps = 5/159 (3%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
||| |||||||| ||||| | || || ||| ||||||| || |||| || ||| |
Sbjct 19944 GTAATCATTCCATTTACAGGGCCACACAAGTCTCCTGTATTAG-ATTTGTTA-CAC--CT 19999
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
| | | || | || ||||||||| | ||||||||||||||||||||| |||||| |
Sbjct 20000 TTTTTGGTTTGGAAGTGAGTAATTTGCACACCTGCTGCCTTCCTTGGATGTAGTAGCCAT 20059
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158
||||||| ||| || || |||||| | |||| ||| |||
Sbjct 20060 TTCTCAGCCTCACTTTCAGGAATCAAGCCCTGATTTCCC 20098
Score = 98.7 bits (108), Expect = 3e-18
Identities = 122/163 (75%), Gaps = 8/163 (5%)
Strand=Plus/Plus
Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-CTATCAAATAAACG 404
|||||||| ||||| |||||||| ||||| | || || | | | | ||| ||| |
Sbjct 20326 ATGTATTATCTCTACAATTACCA--GTTATTAAAACAGCAAAGGAGCAAGCAACCAAAGG 20383
Query 405 ATAA----CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460
| || |||||||| |||||||||| || ||||||||||| || | ||| || |
Sbjct 20384 ACAAAAAACTGATTTAGTGAGCCATTCACAATTTCACTGTATCAGCTGGGTGTACATAAA 20443
Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503
||| | | ||||||||||||||||||||||||| ||| ||||
Sbjct 20444 CATCCGTAGCTTAATCTTTGAGACAAGCATATG-TTACGGGCA 20485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509864487680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |