Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq650 217 3e-54 seq228 176 8e-42 seq336 156 7e-36 seq1471 129 1e-27 >seq650 Length=8275019 Score = 217 bits (240), Expect = 3e-54 Identities = 206/263 (78%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 || |||||||| || |||||||||||||| ||||| ||| |||||||||| ||| |||| Sbjct 4691359 CAGCAGTAGGGAAACACTAACCTGTCTCACCACGGTGTAATCCCAGCTCACATTCTCTAT 4691300 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||| ||||||||| |||||||||||| |||| |||||| || ||| Sbjct 4691299 CAGTGGGTGAACAACCCAACGCTTGGTGAATTCTGCTTCACAATGACAGGAAGTGCTGAC 4691240 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 | ||||||||||||||||| | | || |||| |||| || ||||||||| ||||| || Sbjct 4691239 ACCGAAGGATCAAAAAGCAGCAACACTGTGAATGCTTAGCCGCCACAAGCTGGTTATGCC 4691180 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||| | |||||||||| ||||| || | || | || | ||| ||| |||| Sbjct 4691179 TGTTGGAACTTTTCTGATACCTCCTGCTTAAAGCCCAAAAGGTCAGAAGTGTCGTGAGGC 4691120 Query 272 CACACTTTCATGGTTTGTATTCA 294 | |||||||||||| | |||||| Sbjct 4691119 CCCACTTTCATGGTCTATATTCA 4691097 >seq228 Length=3625708 Score = 176 bits (194), Expect = 8e-42 Identities = 137/162 (85%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || || ||||| |||||||||||||||||||| Sbjct 2465110 TACTGAGCAGGATTACCATGGCAACAACACATCGTCAGTGGGGTAAAACTAACCTGTCTC 2465051 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||| |||||||||||||||||||||||||||| |||||||| | Sbjct 2465050 ACGACGGTCTAAACCCAGGTCACGTTCCCTATTAGTGGGTGAACAATTCAACGCTTGGTG 2464991 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 ||| ||||||| ||||||||||||||||||| | |||||| Sbjct 2464990 AATACTGCTTCATAATGATAGGAAGAGCCGACACCAAAGGAT 2464949 >seq336 Length=4189118 Score = 156 bits (172), Expect = 7e-36 Identities = 104/116 (90%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 271807 TCATCAGCGGGGTAAAACTAACCTGTCTCACGACAATCTAAACCCAGCTCACGTTCCCTA 271866 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||||||||||||||||||||||||| |||||||| ||| ||||||||||||| Sbjct 271867 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGTTTCACAATGATAGGAAGAG 271922 >seq1471 Length=1515421 Score = 129 bits (142), Expect = 1e-27 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||| ||||||| |||||||||| | |||||| ||||||||| |||||||| Sbjct 577680 TCATCAGTAGAATAAAACTGACCTGTCTCACAAGGGTCTACTCCCAGCTCATGTTCCCTA 577621 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 |||||||||||||||||||| |||| || ||||||||| |||||||||| || Sbjct 577620 TTAGTGGGTGAACAATCCAATGCTTGGTGACTTCTGCTTCACAATGATAGGAAAAG 577565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854121696288