Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1318 179 1e-42 seq33 129 2e-27 seq536 122 3e-25 seq2418 113 1e-22 seq32056 107 6e-21 seq749 104 7e-20 seq57 104 7e-20 seq446 102 2e-19 seq26 102 2e-19 >seq1318 Length=210308 Score = 179 bits (198), Expect = 1e-42 Identities = 140/166 (84%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398 |||||||||||||||||||||||||| |||||||| |||| | | | | | |||| Sbjct 189132 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 189191 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 189192 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 189251 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 189252 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 189296 Score = 179 bits (198), Expect = 1e-42 Identities = 140/166 (84%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398 |||||||||||||||||||||||||| |||||||| |||| | | | | | |||| Sbjct 199425 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 199484 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 199485 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 199544 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 199545 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 199589 >seq33 Length=4926149 Score = 129 bits (142), Expect = 2e-27 Identities = 132/167 (79%), Gaps = 9/167 (5%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACT-ATCAAA 398 ||| | | |||||||| ||||||||| |||||||| |||| | || | | | |||| Sbjct 3781876 GCAGGGAATAGCTCTATAATTACCACAGTTATCCAAGTAGGAGAGGAGCAAGTGACCAAA 3781817 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTT 457 ||| ||||||||||||| ||||||||||||||||||||| | || || | ||||| Sbjct 3781816 GCAACTATAACTGATTTAACGAGCCATTCGCAGTTTCACTGAACCAGCCTG--TGTACTT 3781759 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| |||| ||||| ||||||| ||| ||||| |||||| ||| Sbjct 3781758 AGACATGAATGGTTTAATTTTTGAGAAAAGTATATG-CTACTGTCAG 3781713 >seq536 Length=3072602 Score = 122 bits (134), Expect = 3e-25 Identities = 96/112 (86%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTA 452 |||| ||| |||| |||||||||||||||||| || |||||||||| | ||| | Sbjct 1733779 CAAAGGAACCATAAGTGATTTAATGAGCCATTCACAATTTCACTGTACTGGCCATGC--A 1733722 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 1733721 TACTTAGACATGCATGGCTTAATCTTTGAGAAAAGCATATG-CTACTGGCAG 1733671 >seq2418 Length=16592 Score = 113 bits (124), Expect = 1e-22 Identities = 124/163 (76%), Gaps = 8/163 (5%) Strand=Plus/Plus Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAATA 400 |||||||| ||||| |||||||| ||||| || || || | | | | |||| Sbjct 14233 ATGTATTATCTCTACAATTACCA--GTTATTCAAACAGCAAAGGAGCAAGCAACCAAAGG 14290 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| | || ||||||| |||||||||| || ||||||||||| || | ||| || | Sbjct 14291 AACCAAAATTGATTTAGTGAGCCATTCACAATTTCACTGTATCAGCTGGGTGTACGTAAA 14350 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||| ||||||||||||||||||||||||||||| ||| |||| Sbjct 14351 CATCCATGGCTTAATCTTTGAGACAAGCATATG-TTACGGGCA 14392 Score = 102 bits (112), Expect = 2e-19 Identities = 121/159 (76%), Gaps = 5/159 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||| |||||||| ||||| | || || ||| ||||||| || |||| || ||| | Sbjct 13850 GTAATCATTCCATTTACAGGGCCGCACAAGTCTCCTGTATTAG-ATTTGTTA-CAC--CT 13905 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | | || || | || ||||||||| | ||||||||||||||||||||| ||||| | Sbjct 13906 TTTTTGGGTTGGAAGTGAGTAATTTGCACACCTGCTGCCTTCCTTGGATGTAGTAGCTAT 13965 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 ||||||| |||||| || |||||| | |||| ||| ||| Sbjct 13966 TTCTCAGCCTCCCTTTCAGGAATCAAGCCCTGATTTCCC 14004 >seq32056 Length=1644 Score = 107 bits (118), Expect = 6e-21 Identities = 122/159 (77%), Gaps = 5/159 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||| |||||||| ||||| | || || ||| ||||||| || |||| || ||| | Sbjct 356 GTAATCATTCCATTTACAGGGCCGCACAAGTCTCCTGTATTAG-ATTTGTTA-CAC--CT 301 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | | || |||| || ||||||||| | ||||||||||||||||||||| ||||| | Sbjct 300 TTTTTGGGTTGGGAGTGAGTAATTTGCACACCTGCTGCCTTCCTTGGATGTAGTAGCTAT 241 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 ||||||| |||||| || |||||| | |||| ||| ||| Sbjct 240 TTCTCAGCCTCCCTTTCAGGAATCAAGCCCTGATTTCCC 202 >seq749 Length=2976236 Score = 104 bits (114), Expect = 7e-20 Identities = 91/111 (82%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| ||| ||||||||| |||||||||| ||||||| Sbjct 2207929 TACTCATTCCAATTACAGGACATTGAAAAAGCCCTGTACTGTTATTTATTGTTACTACCT 2207988 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG 111 |||| ||| ||| |||||||||||| | |||| |||| ||||||| |||| Sbjct 2207989 CCCCAGGTCAGGAGTGGGTAATTTGCACACCTGTTGCCATCCTTGG-TGTG 2208038 >seq57 Length=11106996 Score = 104 bits (114), Expect = 7e-20 Identities = 131/174 (75%), Gaps = 16/174 (9%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGG------TTATCCATGTAGTA----AGGTACT- 392 |||| |||| |||||||||||| || ||||| |||||| | ||| | | Sbjct 8862823 GCATATATTCGCTCTAGAATTAGCAGTTATCTACTTATCTATGTAGGAGAGGAGGGAGTG 8862882 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCT 450 |||||| ||| ||||||||||||| |||||| | ||| |||| || || || ||| Sbjct 8862883 ATCAAAGGAACCATAACTGATTTAAGGAGCCACTTGCACTTTCCCTTTACCAGCCCTGCG 8862942 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || | |||||||| |||||||||||||||||||||||| || |||||||||| Sbjct 8862943 TACA--TAGACATGTTTGGCTTAATCTTTGAGACAAGCATGTG-CTACTGGCAG 8862993 Score = 86.0 bits (94), Expect = 2e-14 Identities = 105/143 (73%), Gaps = 13/143 (9%) Strand=Plus/Plus Query 45 TTTATTGTCACTACCTCCCCGT--GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||| |||| |||||||| || ||| | | |||||||| ||| |||||||| Sbjct 8862492 TTTCTTGTAACTACCTC---GTAAGTCAGAAGTGGGTAATGTGC--------TGCCTTCC 8862540 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || || ||||||||| ||||| || ||| ||| | | ||| |||||| ||| ||| | | Sbjct 8862541 TTAGACGTGGTAGCCTTTTCTTAGACTCTCTCCCTGAAATAAAACCCTTATTTCCCATCA 8862600 Query 163 CCCGTTGATACCATGGTAGGCCA 185 ||||| |||||||||||||| Sbjct 8862601 CCCGTGCTCACCATGGTAGGCCA 8862623 >seq446 Length=2739621 Score = 102 bits (112), Expect = 2e-19 Identities = 120/156 (77%), Gaps = 11/156 (7%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTA----CTATCAAA 398 |||||||||||| ||||| ||| | | |||||||| | || | ||| | | |||| Sbjct 2135641 GCATGTATTAGCGCTAGAGTTAAC-CAGTTATCCAAGCAGAAGAGGCGTGAGCAACCAAA 2135583 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTT 457 ||| ||||||||| ||||||||||||| |||||| |||| | || ||| ||||| Sbjct 2135582 GGAACCATAACTGATATAATGAGCCATTCACAGTTTTACTGCACCAGCATGC--GTACTT 2135525 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 |||| ||||||| || |||||| |||||||||||| Sbjct 2135524 AGACGTGCATGGATTCATCTTT--GACAAGCATATG 2135491 >seq26 Length=2428533 Score = 102 bits (112), Expect = 2e-19 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 68 TCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGG 127 || ||| |||| ||||||| |||||||||||||| ||||||||||||| |||||||||| Sbjct 1212885 TCTGGAGTGGGGAATTTGCATGCCTGCTGCCTTCCCTGGATGTGGTAGCAGTTTCTCAGG 1212944 Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 |||||| ||| |||| | ||||||| ||| Sbjct 1212945 CTCCCTGTCCAGAATTATATCCTAATTTCCC 1212975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509908017408