Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1318 179 1e-42
seq33 129 2e-27
seq536 122 3e-25
seq2418 113 1e-22
seq32056 107 6e-21
seq749 104 7e-20
seq57 104 7e-20
seq446 102 2e-19
seq26 102 2e-19
>seq1318
Length=210308
Score = 179 bits (198), Expect = 1e-42
Identities = 140/166 (84%), Gaps = 6/166 (4%)
Strand=Plus/Plus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398
|||||||||||||||||||||||||| |||||||| |||| | | | | | ||||
Sbjct 189132 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 189191
Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458
||| ||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 189192 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 189251
Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 189252 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 189296
Score = 179 bits (198), Expect = 1e-42
Identities = 140/166 (84%), Gaps = 6/166 (4%)
Strand=Plus/Plus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398
|||||||||||||||||||||||||| |||||||| |||| | | | | | ||||
Sbjct 199425 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 199484
Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458
||| ||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 199485 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 199544
Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 199545 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 199589
>seq33
Length=4926149
Score = 129 bits (142), Expect = 2e-27
Identities = 132/167 (79%), Gaps = 9/167 (5%)
Strand=Plus/Minus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACT-ATCAAA 398
||| | | |||||||| ||||||||| |||||||| |||| | || | | | ||||
Sbjct 3781876 GCAGGGAATAGCTCTATAATTACCACAGTTATCCAAGTAGGAGAGGAGCAAGTGACCAAA 3781817
Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTT 457
||| ||||||||||||| ||||||||||||||||||||| | || || | |||||
Sbjct 3781816 GCAACTATAACTGATTTAACGAGCCATTCGCAGTTTCACTGAACCAGCCTG--TGTACTT 3781759
Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||| |||| ||||| ||||||| ||| ||||| |||||| |||
Sbjct 3781758 AGACATGAATGGTTTAATTTTTGAGAAAAGTATATG-CTACTGTCAG 3781713
>seq536
Length=3072602
Score = 122 bits (134), Expect = 3e-25
Identities = 96/112 (86%), Gaps = 5/112 (4%)
Strand=Plus/Minus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTA 452
|||| ||| |||| |||||||||||||||||| || |||||||||| | ||| |
Sbjct 1733779 CAAAGGAACCATAAGTGATTTAATGAGCCATTCACAATTTCACTGTACTGGCCATGC--A 1733722
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1733721 TACTTAGACATGCATGGCTTAATCTTTGAGAAAAGCATATG-CTACTGGCAG 1733671
>seq2418
Length=16592
Score = 113 bits (124), Expect = 1e-22
Identities = 124/163 (76%), Gaps = 8/163 (5%)
Strand=Plus/Plus
Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAATA 400
|||||||| ||||| |||||||| ||||| || || || | | | | ||||
Sbjct 14233 ATGTATTATCTCTACAATTACCA--GTTATTCAAACAGCAAAGGAGCAAGCAACCAAAGG 14290
Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460
||| | || ||||||| |||||||||| || ||||||||||| || | ||| || |
Sbjct 14291 AACCAAAATTGATTTAGTGAGCCATTCACAATTTCACTGTATCAGCTGGGTGTACGTAAA 14350
Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503
||| ||||||||||||||||||||||||||||| ||| ||||
Sbjct 14351 CATCCATGGCTTAATCTTTGAGACAAGCATATG-TTACGGGCA 14392
Score = 102 bits (112), Expect = 2e-19
Identities = 121/159 (76%), Gaps = 5/159 (3%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
||| |||||||| ||||| | || || ||| ||||||| || |||| || ||| |
Sbjct 13850 GTAATCATTCCATTTACAGGGCCGCACAAGTCTCCTGTATTAG-ATTTGTTA-CAC--CT 13905
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
| | || || | || ||||||||| | ||||||||||||||||||||| ||||| |
Sbjct 13906 TTTTTGGGTTGGAAGTGAGTAATTTGCACACCTGCTGCCTTCCTTGGATGTAGTAGCTAT 13965
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158
||||||| |||||| || |||||| | |||| ||| |||
Sbjct 13966 TTCTCAGCCTCCCTTTCAGGAATCAAGCCCTGATTTCCC 14004
>seq32056
Length=1644
Score = 107 bits (118), Expect = 6e-21
Identities = 122/159 (77%), Gaps = 5/159 (3%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
||| |||||||| ||||| | || || ||| ||||||| || |||| || ||| |
Sbjct 356 GTAATCATTCCATTTACAGGGCCGCACAAGTCTCCTGTATTAG-ATTTGTTA-CAC--CT 301
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
| | || |||| || ||||||||| | ||||||||||||||||||||| ||||| |
Sbjct 300 TTTTTGGGTTGGGAGTGAGTAATTTGCACACCTGCTGCCTTCCTTGGATGTAGTAGCTAT 241
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158
||||||| |||||| || |||||| | |||| ||| |||
Sbjct 240 TTCTCAGCCTCCCTTTCAGGAATCAAGCCCTGATTTCCC 202
>seq749
Length=2976236
Score = 104 bits (114), Expect = 7e-20
Identities = 91/111 (82%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 2 TACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| ||| ||| ||||||||| |||||||||| |||||||
Sbjct 2207929 TACTCATTCCAATTACAGGACATTGAAAAAGCCCTGTACTGTTATTTATTGTTACTACCT 2207988
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG 111
|||| ||| ||| |||||||||||| | |||| |||| ||||||| ||||
Sbjct 2207989 CCCCAGGTCAGGAGTGGGTAATTTGCACACCTGTTGCCATCCTTGG-TGTG 2208038
>seq57
Length=11106996
Score = 104 bits (114), Expect = 7e-20
Identities = 131/174 (75%), Gaps = 16/174 (9%)
Strand=Plus/Plus
Query 344 GCATGTATTAGCTCTAGAATTACCACGG------TTATCCATGTAGTA----AGGTACT- 392
|||| |||| |||||||||||| || ||||| |||||| | ||| | |
Sbjct 8862823 GCATATATTCGCTCTAGAATTAGCAGTTATCTACTTATCTATGTAGGAGAGGAGGGAGTG 8862882
Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCT 450
|||||| ||| ||||||||||||| |||||| | ||| |||| || || || |||
Sbjct 8862883 ATCAAAGGAACCATAACTGATTTAAGGAGCCACTTGCACTTTCCCTTTACCAGCCCTGCG 8862942
Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|| | |||||||| |||||||||||||||||||||||| || ||||||||||
Sbjct 8862943 TACA--TAGACATGTTTGGCTTAATCTTTGAGACAAGCATGTG-CTACTGGCAG 8862993
Score = 86.0 bits (94), Expect = 2e-14
Identities = 105/143 (73%), Gaps = 13/143 (9%)
Strand=Plus/Plus
Query 45 TTTATTGTCACTACCTCCCCGT--GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||| |||| |||||||| || ||| | | |||||||| ||| ||||||||
Sbjct 8862492 TTTCTTGTAACTACCTC---GTAAGTCAGAAGTGGGTAATGTGC--------TGCCTTCC 8862540
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
|| || ||||||||| ||||| || ||| ||| | | ||| |||||| ||| ||| | |
Sbjct 8862541 TTAGACGTGGTAGCCTTTTCTTAGACTCTCTCCCTGAAATAAAACCCTTATTTCCCATCA 8862600
Query 163 CCCGTTGATACCATGGTAGGCCA 185
||||| ||||||||||||||
Sbjct 8862601 CCCGTGCTCACCATGGTAGGCCA 8862623
>seq446
Length=2739621
Score = 102 bits (112), Expect = 2e-19
Identities = 120/156 (77%), Gaps = 11/156 (7%)
Strand=Plus/Minus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTA----CTATCAAA 398
|||||||||||| ||||| ||| | | |||||||| | || | ||| | | ||||
Sbjct 2135641 GCATGTATTAGCGCTAGAGTTAAC-CAGTTATCCAAGCAGAAGAGGCGTGAGCAACCAAA 2135583
Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTT 457
||| ||||||||| ||||||||||||| |||||| |||| | || ||| |||||
Sbjct 2135582 GGAACCATAACTGATATAATGAGCCATTCACAGTTTTACTGCACCAGCATGC--GTACTT 2135525
Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493
|||| ||||||| || |||||| ||||||||||||
Sbjct 2135524 AGACGTGCATGGATTCATCTTT--GACAAGCATATG 2135491
>seq26
Length=2428533
Score = 102 bits (112), Expect = 2e-19
Identities = 77/91 (85%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 68 TCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGG 127
|| ||| |||| ||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct 1212885 TCTGGAGTGGGGAATTTGCATGCCTGCTGCCTTCCCTGGATGTGGTAGCAGTTTCTCAGG 1212944
Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCC 158
|||||| ||| |||| | ||||||| |||
Sbjct 1212945 CTCCCTGTCCAGAATTATATCCTAATTTCCC 1212975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509908017408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |