Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq279 104 2e-17 seq48 82.4 6e-11 >seq279 Length=9007507 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||||||||| || ||| ||| |||||| Sbjct 4422805 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTACGGCTTTCAAATTCTCATCGAGAAT 4422864 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 4422865 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 4422911 >seq48 Length=13907917 Score = 82.4 bits (90), Expect = 6e-11 Identities = 103/143 (72%), Gaps = 10/143 (7%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 |||||||| || ||||| |||||||| || ||||| || || |||| ||||| || Sbjct 114513 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 114572 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||| ||||| | ||||||||| || || ||||| || Sbjct 114573 TTGCTCTTCC----------ATCTTTGTAGAGCATGTACGGGGTACCTGTCTCGGTCTGA 114622 Query 66170 GACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 114623 GACTCAATGATGGCATACCAAAG 114645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397410172088720