Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq844 351 2e-94 seq3533 349 6e-94 seq1702 214 3e-53 seq1430 174 3e-41 seq872 156 7e-36 seq322 129 1e-27 >seq844 Length=4880525 Score = 351 bits (388), Expect = 2e-94 Identities = 255/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 36257 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 36316 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 36317 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 36376 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 36377 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 36436 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 36437 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 36496 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 36497 TAAAACCCCAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 36550 >seq3533 Length=5370 Score = 349 bits (386), Expect = 6e-94 Identities = 236/262 (90%), Gaps = 3/262 (1%) Strand=Plus/Plus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 1017 CAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTGG 1076 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| Sbjct 1077 TGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAAGGATAGGAAGAGCCGACATC 1136 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1137 GAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 1196 Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGA--CTAAAGGATCGATAGGC 271 ||||||||||||| ||||||| || ||| ||| | | | ||||||||||||||| Sbjct 1197 GGTAACTTTTCTGACACCTCTTGCTAGAAACCTTCTAATAATTCAAAAGGATCGATAGGC 1256 Query 272 CACACTTTCATGGTTTGTATTC 293 ||| ||||| ||| ||||||| Sbjct 1257 CACGCTTTCGCGGTCTGTATTC 1278 >seq1702 Length=1133747 Score = 214 bits (236), Expect = 3e-53 Identities = 205/263 (78%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 || |||||||| || |||||||||||||| ||||| ||| |||||||||| ||| |||| Sbjct 420027 CAGCAGTAGGGCAACACTAACCTGTCTCACCACGGTGTAATCCCAGCTCACATTCTCTAT 419968 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||| ||||||||| |||||||||||| |||| |||||| || ||| Sbjct 419967 CAGTGGGTGAACAACCCAACGCTTGGTGAATTCTGCTTCACAATGACAGGAAGTGCTGAC 419908 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 | ||||||||||||||||| | | || |||| |||| || |||||||| ||||| || Sbjct 419907 ACCGAAGGATCAAAAAGCAGCAACACTGTGAATGCTTAGCCACCACAAGCTGGTTATGCC 419848 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||| | |||||||||| ||||| || | || | || | ||| ||| |||| Sbjct 419847 TGTTGGAACTTTTCTGATACCTCCTGCTTAAAGCCCAAAAGGTCAGAAGTGTCGTGAGGC 419788 Query 272 CACACTTTCATGGTTTGTATTCA 294 | |||||||||||| | |||||| Sbjct 419787 CCCACTTTCATGGTCTATATTCA 419765 >seq1430 Length=2809787 Score = 174 bits (192), Expect = 3e-41 Identities = 117/131 (89%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 395458 TCGTCAGTGGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGGTCACGTTCCCTA 395517 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||| Sbjct 395518 TTAGTGGGTGAACAATTCAACGCTTGGTGAATACTGCTTCATAATGATAGGAAGAGCCGA 395577 Query 151 CATCGAAGGAT 161 || | |||||| Sbjct 395578 CACCAAAGGAT 395588 >seq872 Length=1154093 Score = 156 bits (172), Expect = 7e-36 Identities = 104/116 (90%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 880350 TCATCAGCGGGGTAAAACTAACCTGTCTCACGACAATCTAAACCCAGCTCACGTTCCCTA 880291 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||||||||||||||||||||||||| |||||||| ||| ||||||||||||| Sbjct 880290 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGTTTCACAATGATAGGAAGAG 880235 >seq322 Length=2465738 Score = 129 bits (142), Expect = 1e-27 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||| ||||||| |||||||||| | |||||| ||||||||| |||||||| Sbjct 514933 TCATCAGTAGAATAAAACTGACCTGTCTCACAAGGGTCTACTCCCAGCTCATGTTCCCTA 514992 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 |||||||||||||||||||| |||| || ||||||||| |||||||||| || Sbjct 514993 TTAGTGGGTGAACAATCCAATGCTTGGTGACTTCTGCTTCACAATGATAGGAAAAG 515048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854286074304